MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.4 nTPM
HPA Brain:82.2 nTPM
GTEx:85.4 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:7.2 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.4
2586 Male, age 75, left hemisphere 124.8
1827 Male, age 72, unknown 89.8
2828 Female, age 72, unknown 89.3
2666 Male, age 74, left hemisphere 83.0
1870 Female, age 42, unknown 79.7
1833 Male, age 53, unknown 78.0
2411 Female, age 72, unknown 71.8
2019 Male, age 18, unknown 67.8
1830 Male, age 51, unknown 65.9
2219 Male, age 76, both hemispheres 64.0
Dorsal raphe nucleus
nTPM: 77.2
2047 Male, age 72, unknown 94.0
2298 Female, age 72, unknown 77.3
2016 Female, age 72, unknown 74.5
1828 Male, age 53, unknown 73.8
2750 Male, age 76, both hemispheres 66.3
Inferior colliculus
nTPM: 82.2
2849 Male, age 72, unknown 94.2
1848 Female, age 42, unknown 82.0
1890 Male, age 53, unknown 80.6
2097 Female, age 72, unknown 72.0
Median raphe nucleus
nTPM: 74.3
2220 Male, age 76, midline 74.3
Periaquaductal grey, anterior
nTPM: 76.2
1795 Male, age 51, unknown 87.0
2502 Female, age 75, unknown 72.6
1947 Male, age 18, unknown 68.8
Periaquaductal grey, dorsal
nTPM: 80.7
1840 Male, age 53, unknown 88.0
2850 Male, age 76, both hemispheres 86.0
1831 Male, age 72, unknown 77.1
2464 Female, age 72, unknown 71.6
Periaquaductal grey, lateral
nTPM: 76.8
2053 Male, age 18, unknown 80.2
2140 Male, age 76, both hemispheres 80.1
2272 Male, age 74, both hemispheres 70.1
Pretectal area
nTPM: 81.1
2825 Male, age 18, unknown 88.2
2007 Male, age 72, unknown 88.1
1944 Female, age 72, unknown 87.6
1816 Male, age 51, unknown 87.3
1817 Female, age 42, unknown 87.1
2667 Female, age 75, unknown 83.7
1815 Male, age 53, unknown 79.6
2407 Male, age 75, both hemispheres 77.7
2273 Male, age 74, both hemispheres 74.8
2224 Female, age 72, unknown 72.5
2316 Male, age 76, right hemisphere 65.4
Red nucleus
nTPM: 76.3
2588 Male, age 74, left hemisphere 82.7
2503 Female, age 72, unknown 81.8
2769 Male, age 72, unknown 80.0
2584 Male, age 75, left hemisphere 78.8
2725 Female, age 75, unknown 77.3
1904 Male, age 53, unknown 77.0
2785 Male, age 18, unknown 75.9
2227 Male, age 72, unknown 74.2
1954 Female, age 42, unknown 72.6
1821 Female, age 72, unknown 72.4
2823 Male, age 76, right hemisphere 72.4
1865 Male, age 51, unknown 70.8
Substantia nigra
nTPM: 72.4
2583 Male, age 75, right hemisphere 88.8
2699 Male, age 18, unknown 84.9
2665 Male, age 74, both hemispheres 81.6
1889 Female, age 72, unknown 81.3
1916 Female, age 42, unknown 81.2
1851 Male, age 51, unknown 74.0
2590 Female, age 75, unknown 65.4
1941 Male, age 53, unknown 64.4
2409 Female, age 72, unknown 56.3
2241 Male, age 72, unknown 46.1
Superior colliculus
nTPM: 80.5
2664 Male, age 75, both hemispheres 102.6
1796 Male, age 53, unknown 91.7
2668 Female, age 75, unknown 86.2
1839 Male, age 51, unknown 77.8
2587 Male, age 74, left hemisphere 76.6
2261 Male, age 18, unknown 76.5
2087 Female, age 72, unknown 75.4
1913 Female, age 42, unknown 73.8
1995 Male, age 72, unknown 72.5
1895 Male, age 76, right hemisphere 71.9
Ventral tegmental area
nTPM: 73.4
1915 Female, age 42, unknown 81.0
1942 Male, age 51, unknown 76.0
2410 Female, age 72, unknown 73.0
2223 Female, age 72, unknown 72.9
2021 Male, age 53, unknown 69.9
2218 Male, age 76, both hemispheres 67.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.4
Samples: 139

Max nTPM: 204.2
Min nTPM: 30.8
Std nTPM: 25.6
Median nTPM: 84.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 204.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 141.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 132.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 127.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 126.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 125.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 125.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 121.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 120.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.4
FF:10158-103A5 76 years, female 52.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.5
Samples: 4

Max nTPM: 65.6
Min nTPM: 34.9
Sample A Female 65.6
Sample B Female 44.9
Sample C Male 34.9
Sample D Male 40.5
Midbrain
nTPM: 60.4
Samples: 4

Max nTPM: 70.9
Min nTPM: 48.2
Sample A Female 70.9
Sample B Female 48.2
Sample C Male 62.2
Sample D Male 60.3
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 48.8
Min nTPM: 48.4
Sample B Female 48.8
Sample C Male 48.6
Sample D Male 48.4
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 72.3
Min nTPM: 41.1
Sample A Female 72.3
Sample B Female 50.5
Sample C Male 41.1
Sample D Male 51.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Male 8.2
Sample B Male 6.9
Sample C Female 6.1
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71493026 Antisense, RP_050913_02_A06, Mouse strain C57BL/6J (56 days, male) 0.4

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