MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:41.9 nTPM
GTEx:14.2 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:22.6 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.9
2586 Male, age 75, left hemisphere 58.5
1827 Male, age 72, unknown 43.2
2666 Male, age 74, left hemisphere 42.6
2411 Female, age 72, unknown 42.3
1833 Male, age 53, unknown 41.7
1870 Female, age 42, unknown 40.5
1830 Male, age 51, unknown 38.9
2828 Female, age 72, unknown 38.9
2019 Male, age 18, unknown 38.3
2219 Male, age 76, both hemispheres 34.3
Dorsal raphe nucleus
nTPM: 37.0
2016 Female, age 72, unknown 38.4
2298 Female, age 72, unknown 37.1
2047 Male, age 72, unknown 36.8
2750 Male, age 76, both hemispheres 36.4
1828 Male, age 53, unknown 36.2
Inferior colliculus
nTPM: 39.9
1848 Female, age 42, unknown 42.4
2849 Male, age 72, unknown 41.5
1890 Male, age 53, unknown 38.1
2097 Female, age 72, unknown 37.5
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 41.3
1947 Male, age 18, unknown 43.2
2502 Female, age 75, unknown 42.8
1795 Male, age 51, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 36.0
1840 Male, age 53, unknown 39.7
2464 Female, age 72, unknown 38.5
1831 Male, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 32.7
Periaquaductal grey, lateral
nTPM: 32.7
2140 Male, age 76, both hemispheres 35.8
2053 Male, age 18, unknown 33.6
2272 Male, age 74, both hemispheres 28.7
Pretectal area
nTPM: 37.7
2007 Male, age 72, unknown 41.9
1816 Male, age 51, unknown 41.7
1817 Female, age 42, unknown 41.4
2407 Male, age 75, both hemispheres 40.1
2825 Male, age 18, unknown 39.7
1815 Male, age 53, unknown 39.3
1944 Female, age 72, unknown 38.9
2316 Male, age 76, right hemisphere 35.3
2667 Female, age 75, unknown 34.0
2224 Female, age 72, unknown 33.7
2273 Male, age 74, both hemispheres 28.8
Red nucleus
nTPM: 41.5
2588 Male, age 74, left hemisphere 48.6
2584 Male, age 75, left hemisphere 44.7
1821 Female, age 72, unknown 43.9
2503 Female, age 72, unknown 43.5
2769 Male, age 72, unknown 43.1
2227 Male, age 72, unknown 41.7
1954 Female, age 42, unknown 40.9
1865 Male, age 51, unknown 40.5
2785 Male, age 18, unknown 39.9
1904 Male, age 53, unknown 39.8
2725 Female, age 75, unknown 36.6
2823 Male, age 76, right hemisphere 34.5
Substantia nigra
nTPM: 39.7
2583 Male, age 75, right hemisphere 46.0
2665 Male, age 74, both hemispheres 42.6
1889 Female, age 72, unknown 40.8
2590 Female, age 75, unknown 40.6
1851 Male, age 51, unknown 40.1
1916 Female, age 42, unknown 39.3
1941 Male, age 53, unknown 38.0
2699 Male, age 18, unknown 37.0
2241 Male, age 72, unknown 36.2
2409 Female, age 72, unknown 36.0
Superior colliculus
nTPM: 40.0
2664 Male, age 75, both hemispheres 46.9
2668 Female, age 75, unknown 46.5
2261 Male, age 18, unknown 41.7
1796 Male, age 53, unknown 41.5
1839 Male, age 51, unknown 40.0
1895 Male, age 76, right hemisphere 37.8
1913 Female, age 42, unknown 37.3
1995 Male, age 72, unknown 37.1
2087 Female, age 72, unknown 36.8
2587 Male, age 74, left hemisphere 34.5
Ventral tegmental area
nTPM: 37.5
2223 Female, age 72, unknown 40.1
2410 Female, age 72, unknown 39.5
1942 Male, age 51, unknown 39.3
1915 Female, age 42, unknown 36.6
2021 Male, age 53, unknown 35.5
2218 Male, age 76, both hemispheres 34.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 21.4
Min nTPM: 9.4
Std nTPM: 2.2
Median nTPM: 14.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 19.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 19.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 18.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 18.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 18.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 17.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 17.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 17.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 19.8
Min nTPM: 15.2
Sample A Female 19.8
Sample B Female 15.2
Sample C Male 19.2
Sample D Male 17.8
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 24.2
Min nTPM: 17.9
Sample A Female 24.2
Sample B Female 17.9
Sample C Male 21.9
Sample D Male 18.7
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.7
Min nTPM: 16.4
Sample B Female 17.2
Sample C Male 18.7
Sample D Male 16.4
Superior colliculi
nTPM: 19.0
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.4
Sample A Female 19.4
Sample B Female 15.4
Sample C Male 21.1
Sample D Male 19.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.5
Sample A Male 22.1
Sample B Male 21.5
Sample C Female 23.0
Sample D Female 23.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
69173226 Antisense, RP_050329_01_B11, Mouse strain C57BL/6J (56 days, male) 7.4
81600098 Antisense, RP_080110_03_D11, Mouse strain C57BL/6J (56 days, male) 5.4

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