MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:79.6 nTPM
GTEx:16.1 nTPM
FANTOM5:113.8 Scaled Tags Per Million
Pig:83.7 nTPM
Mouse:90.4 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.3
2219 Male, age 76, both hemispheres 73.4
2411 Female, age 72, unknown 63.4
2019 Male, age 18, unknown 62.0
1827 Male, age 72, unknown 57.5
1870 Female, age 42, unknown 51.8
2666 Male, age 74, left hemisphere 50.9
1833 Male, age 53, unknown 49.7
2586 Male, age 75, left hemisphere 46.8
1830 Male, age 51, unknown 46.7
2828 Female, age 72, unknown 40.7
Dorsal raphe nucleus
nTPM: 58.5
1828 Male, age 53, unknown 64.5
2047 Male, age 72, unknown 63.1
2750 Male, age 76, both hemispheres 61.6
2298 Female, age 72, unknown 60.6
2016 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 49.2
2097 Female, age 72, unknown 56.6
1890 Male, age 53, unknown 48.7
1848 Female, age 42, unknown 46.3
2849 Male, age 72, unknown 45.3
Median raphe nucleus
nTPM: 79.6
2220 Male, age 76, midline 79.6
Periaquaductal grey, anterior
nTPM: 57.1
2502 Female, age 75, unknown 61.6
1947 Male, age 18, unknown 56.4
1795 Male, age 51, unknown 53.3
Periaquaductal grey, dorsal
nTPM: 49.3
1831 Male, age 72, unknown 54.4
2850 Male, age 76, both hemispheres 51.8
2464 Female, age 72, unknown 48.7
1840 Male, age 53, unknown 42.4
Periaquaductal grey, lateral
nTPM: 44.5
2272 Male, age 74, both hemispheres 51.2
2053 Male, age 18, unknown 42.1
2140 Male, age 76, both hemispheres 40.1
Pretectal area
nTPM: 62.8
1816 Male, age 51, unknown 84.7
1944 Female, age 72, unknown 81.2
2007 Male, age 72, unknown 76.2
1817 Female, age 42, unknown 74.8
1815 Male, age 53, unknown 68.6
2224 Female, age 72, unknown 59.9
2667 Female, age 75, unknown 58.8
2273 Male, age 74, both hemispheres 54.0
2407 Male, age 75, both hemispheres 48.1
2825 Male, age 18, unknown 47.7
2316 Male, age 76, right hemisphere 37.1
Red nucleus
nTPM: 51.0
1821 Female, age 72, unknown 63.5
2725 Female, age 75, unknown 59.2
2785 Male, age 18, unknown 56.2
1954 Female, age 42, unknown 52.8
2584 Male, age 75, left hemisphere 50.6
2588 Male, age 74, left hemisphere 49.9
1904 Male, age 53, unknown 49.7
2503 Female, age 72, unknown 49.4
1865 Male, age 51, unknown 48.8
2823 Male, age 76, right hemisphere 45.8
2227 Male, age 72, unknown 43.9
2769 Male, age 72, unknown 41.9
Substantia nigra
nTPM: 69.1
1916 Female, age 42, unknown 98.1
1941 Male, age 53, unknown 85.6
2241 Male, age 72, unknown 83.5
1889 Female, age 72, unknown 75.0
1851 Male, age 51, unknown 74.6
2699 Male, age 18, unknown 63.0
2409 Female, age 72, unknown 60.5
2665 Male, age 74, both hemispheres 55.7
2590 Female, age 75, unknown 47.7
2583 Male, age 75, right hemisphere 46.9
Superior colliculus
nTPM: 51.9
2087 Female, age 72, unknown 64.2
2668 Female, age 75, unknown 59.7
2261 Male, age 18, unknown 57.8
1895 Male, age 76, right hemisphere 54.9
1796 Male, age 53, unknown 52.4
2587 Male, age 74, left hemisphere 49.8
2664 Male, age 75, both hemispheres 48.8
1839 Male, age 51, unknown 47.1
1913 Female, age 42, unknown 46.1
1995 Male, age 72, unknown 38.5
Ventral tegmental area
nTPM: 63.2
2218 Male, age 76, both hemispheres 80.1
2410 Female, age 72, unknown 70.4
1915 Female, age 42, unknown 66.3
2223 Female, age 72, unknown 57.1
1942 Male, age 51, unknown 56.1
2021 Male, age 53, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 48.2
Min nTPM: 4.9
Std nTPM: 8.1
Median nTPM: 13.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 33.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 31.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 30.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 29.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 28.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.8
FF:10158-103A5 76 years, female 113.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.5
Samples: 4

Max nTPM: 104.8
Min nTPM: 51.1
Sample A Female 104.8
Sample B Female 55.7
Sample C Male 94.4
Sample D Male 51.1
Midbrain
nTPM: 81.2
Samples: 4

Max nTPM: 103.3
Min nTPM: 61.8
Sample A Female 61.8
Sample B Female 71.9
Sample C Male 103.3
Sample D Male 87.8
Periaqueductal gray
nTPM: 66.2
Samples: 3

Max nTPM: 73.3
Min nTPM: 61.0
Sample B Female 61.0
Sample C Male 73.3
Sample D Male 64.4
Superior colliculi
nTPM: 83.8
Samples: 4

Max nTPM: 125.8
Min nTPM: 45.7
Sample A Female 78.1
Sample B Female 45.7
Sample C Male 125.8
Sample D Male 85.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.4
Samples: 4

Max nTPM: 101.2
Min nTPM: 77.4
Sample A Male 77.4
Sample B Male 93.0
Sample C Female 101.2
Sample D Female 90.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71529995 Antisense, RP_050915_01_E04, Mouse strain C57BL/6J (56 days, male) 0.7

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