MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:21.1 nTPM
GTEx:22.3 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:72.6 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2019 Male, age 18, unknown 23.1
1827 Male, age 72, unknown 20.7
2586 Male, age 75, left hemisphere 20.2
2666 Male, age 74, left hemisphere 19.0
1833 Male, age 53, unknown 18.4
2828 Female, age 72, unknown 18.0
1870 Female, age 42, unknown 17.9
2411 Female, age 72, unknown 17.8
2219 Male, age 76, both hemispheres 16.9
1830 Male, age 51, unknown 16.1
Dorsal raphe nucleus
nTPM: 19.8
2298 Female, age 72, unknown 24.3
1828 Male, age 53, unknown 20.5
2016 Female, age 72, unknown 19.4
2047 Male, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 17.3
Inferior colliculus
nTPM: 19.3
2097 Female, age 72, unknown 23.1
1890 Male, age 53, unknown 19.0
1848 Female, age 42, unknown 18.6
2849 Male, age 72, unknown 16.6
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 19.8
1795 Male, age 51, unknown 20.8
2502 Female, age 75, unknown 19.6
1947 Male, age 18, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 18.0
2850 Male, age 76, both hemispheres 18.9
2464 Female, age 72, unknown 18.2
1831 Male, age 72, unknown 17.4
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 20.8
2272 Male, age 74, both hemispheres 24.4
2140 Male, age 76, both hemispheres 20.2
2053 Male, age 18, unknown 17.8
Pretectal area
nTPM: 21.1
1817 Female, age 42, unknown 25.4
1816 Male, age 51, unknown 24.9
2007 Male, age 72, unknown 23.7
2273 Male, age 74, both hemispheres 23.7
1815 Male, age 53, unknown 22.6
1944 Female, age 72, unknown 22.3
2667 Female, age 75, unknown 21.3
2224 Female, age 72, unknown 17.5
2825 Male, age 18, unknown 17.5
2407 Male, age 75, both hemispheres 16.7
2316 Male, age 76, right hemisphere 16.6
Red nucleus
nTPM: 19.7
1821 Female, age 72, unknown 22.7
1865 Male, age 51, unknown 22.4
2785 Male, age 18, unknown 21.6
1904 Male, age 53, unknown 20.2
2725 Female, age 75, unknown 20.2
2503 Female, age 72, unknown 19.7
2769 Male, age 72, unknown 19.5
2823 Male, age 76, right hemisphere 19.1
1954 Female, age 42, unknown 18.9
2227 Male, age 72, unknown 18.9
2584 Male, age 75, left hemisphere 16.4
2588 Male, age 74, left hemisphere 16.4
Substantia nigra
nTPM: 20.9
2409 Female, age 72, unknown 25.1
1916 Female, age 42, unknown 23.5
2241 Male, age 72, unknown 22.6
1889 Female, age 72, unknown 22.3
1851 Male, age 51, unknown 21.2
1941 Male, age 53, unknown 20.9
2590 Female, age 75, unknown 19.2
2699 Male, age 18, unknown 18.3
2665 Male, age 74, both hemispheres 18.2
2583 Male, age 75, right hemisphere 17.2
Superior colliculus
nTPM: 20.1
2261 Male, age 18, unknown 23.7
2087 Female, age 72, unknown 23.4
1796 Male, age 53, unknown 21.9
2587 Male, age 74, left hemisphere 20.9
2668 Female, age 75, unknown 20.7
1995 Male, age 72, unknown 20.4
1913 Female, age 42, unknown 19.1
1839 Male, age 51, unknown 17.6
1895 Male, age 76, right hemisphere 17.6
2664 Male, age 75, both hemispheres 16.2
Ventral tegmental area
nTPM: 19.2
1915 Female, age 42, unknown 21.9
2218 Male, age 76, both hemispheres 20.7
2410 Female, age 72, unknown 20.1
2223 Female, age 72, unknown 19.4
1942 Male, age 51, unknown 17.2
2021 Male, age 53, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 43.4
Min nTPM: 14.0
Std nTPM: 4.0
Median nTPM: 21.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 43.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 32.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 30.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 30.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 28.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 66.3
Min nTPM: 43.4
Sample A Female 66.3
Sample B Female 48.6
Sample C Male 50.7
Sample D Male 43.4
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 65.7
Min nTPM: 47.5
Sample A Female 65.7
Sample B Female 47.5
Sample C Male 54.1
Sample D Male 48.5
Periaqueductal gray
nTPM: 44.8
Samples: 3

Max nTPM: 47.7
Min nTPM: 42.4
Sample B Female 44.2
Sample C Male 47.7
Sample D Male 42.4
Superior colliculi
nTPM: 59.2
Samples: 4

Max nTPM: 62.6
Min nTPM: 52.1
Sample A Female 61.9
Sample B Female 62.6
Sample C Male 60.0
Sample D Male 52.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.6
Samples: 4

Max nTPM: 74.5
Min nTPM: 68.5
Sample A Male 74.5
Sample B Male 73.6
Sample C Female 68.5
Sample D Female 73.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69261415 Antisense, RP_050118_03_D06, Mouse strain C57BL/6J (56 days, male) 3.1

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