BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:25.3 nTPM
HPA Brain:21.2 nTPM
GTEx:25.3 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:96.3 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052217Antibody HPA057284Antibody CAB004978
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.2
2481 Female, age 94, left hemisphere 23.8
2289 Male, age 61, right hemisphere 22.5
1857 Female, age 85, left hemisphere 22.4
2846 Female, age 79, unknown 21.3
1781 Male, age 74, unknown 20.3
2288 Male, age 75, left hemisphere 20.1
2290 Female, age 72, unknown 19.7
1854 Male, age 80, left hemisphere 19.5
Globus pallidus, externus
nTPM: 19.0
2772 Female, age 79, unknown 25.2
1996 Male, age 80, right hemisphere 20.3
2395 Male, age 75, both hemispheres 18.3
2646 Male, age 61, right hemisphere 17.3
2567 Female, age 72, unknown 13.9
Globus pallidus, internus
nTPM: 19.5
2483 Female, age 94, right hemisphere 24.2
2778 Female, age 91, both hemispheres 21.9
1818 Male, age 74, unknown 20.7
2287 Male, age 75, right hemisphere 20.1
2037 Male, age 80, right hemisphere 19.0
2111 Female, age 85, right hemisphere 16.4
2566 Female, age 72, unknown 14.3
Nucleus accumbens
nTPM: 20.2
2824 Male, age 61, right hemisphere 22.5
1856 Female, age 91, right hemisphere 21.8
2286 Male, age 75, left hemisphere 20.8
2391 Female, age 94, left hemisphere 20.6
1806 Female, age 85, left hemisphere 20.2
1783 Male, age 74, unknown 19.5
2698 Female, age 72, unknown 18.5
2732 Male, age 80, right hemisphere 17.5
Nucleus basalis of Meynert
nTPM: 19.4
2484 Female, age 94, left hemisphere 22.6
2393 Male, age 80, right hemisphere 18.8
2569 Male, age 61, both hemispheres 18.2
2821 Male, age 75, both hemispheres 17.9
Nucleus of the diagonal band
nTPM: 19.2
1812 Female, age 91, both hemispheres 20.6
2775 Male, age 80, right hemisphere 20.5
2029 Male, age 61, right hemisphere 19.4
2195 Female, age 85, both hemispheres 19.1
1979 Male, age 74, unknown 16.3
Putamen
nTPM: 19.8
2466 Female, age 79, unknown 24.2
2482 Female, age 94, left hemisphere 22.5
1937 Female, age 91, right hemisphere 20.7
1838 Male, age 80, right hemisphere 19.6
2647 Male, age 75, left hemisphere 18.1
1829 Male, age 74, unknown 17.9
2489 Female, age 72, unknown 16.1
Septal nuclei
nTPM: 19.2
1960 Male, age 74, unknown 23.4
2031 Female, age 72, unknown 23.4
2009 Female, age 91, both hemispheres 19.7
2199 Male, age 80, right hemisphere 18.5
2629 Female, age 94, right hemisphere 18.0
2059 Female, age 85, both hemispheres 16.6
2394 Male, age 61, left hemisphere 14.9
Stria terminalis, bed nucleus
nTPM: 18.5
1974 Female, age 91, both hemispheres 20.2
2486 Female, age 94, both hemispheres 19.2
2201 Male, age 74, unknown 16.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.7
Samples: 246

Max nTPM: 41.7
Min nTPM: 16.8
Std nTPM: 3.9
Median nTPM: 23.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 36.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 36.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 35.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 35.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 33.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 33.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 32.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 32.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.1
Samples: 246

Max nTPM: 41.1
Min nTPM: 16.2
Std nTPM: 4.0
Median nTPM: 24.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 41.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 40.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 39.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 37.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 35.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 35.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 34.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 34.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 34.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 33.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 32.6
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Brain - Putamen (basal ganglia)
Average nTPM: 25.3
Samples: 205

Max nTPM: 37.4
Min nTPM: 16.7
Std nTPM: 4.2
Median nTPM: 24.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 37.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 37.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 37.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 36.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 36.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 35.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 34.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 34.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 34.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 34.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 33.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.3
FF:10164-103B2 76 years, female 25.3
Nucleus accumbens
Scaled Tags Per Million: 32.5
FF:10037-101F1 23-56 years, mixed 32.5
Putamen
Scaled Tags Per Million: 31.0
FF:10176-103C5 60 years, female 31.0
Globus pallidus
Scaled Tags Per Million: 24.0
FF:10175-103C4 60 years, female 28.2
FF:10161-103A8 76 years, female 19.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Caudate
nTPM: 54.5
Samples: 4

Max nTPM: 63.8
Min nTPM: 48.3
Sample A Female 49.1
Sample B Female 56.7
Sample C Male 63.8
Sample D Male 48.3
Putamen
nTPM: 54.8
Samples: 4

Max nTPM: 70.2
Min nTPM: 46.6
Sample A Female 46.6
Sample B Female 49.1
Sample C Male 70.2
Sample D Male 53.2
Septum
nTPM: 47.9
Samples: 4

Max nTPM: 51.2
Min nTPM: 41.5
Sample A Female 51.2
Sample B Female 48.9
Sample C Male 41.5
Sample D Male 50.0
Ventral pallidum
nTPM: 47.1
Samples: 4

Max nTPM: 55.5
Min nTPM: 42.6
Sample A Female 44.7
Sample B Female 55.5
Sample C Male 42.6
Sample D Male 45.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.4
Samples: 4

Max nTPM: 102.4
Min nTPM: 86.2
Sample A Male 102.4
Sample B Male 101.9
Sample C Female 86.2
Sample D Female 95.0
Septum
nTPM: 82.8
Samples: 4

Max nTPM: 90.2
Min nTPM: 77.2
Sample A Male 77.2
Sample B Male 84.6
Sample C Female 90.2
Sample D Female 79.2
Ventral forebrain
nTPM: 91.1
Samples: 4

Max nTPM: 103.7
Min nTPM: 84.5
Sample A Male 90.1
Sample B Male 84.5
Sample C Female 103.7
Sample D Female 85.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.0
69261415 Antisense, RP_050118_03_D06, Mouse strain C57BL/6J (56 days, male) 4.0
Pallidum
Expression energy: 3.4
69261415 Antisense, RP_050118_03_D06, Mouse strain C57BL/6J (56 days, male) 3.4

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