MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.3 nTPM
HPA Brain:1057.5 nTPM
GTEx:97.3 nTPM
FANTOM5:358.6 Scaled Tags Per Million
Pig:432.7 nTPM
Mouse:127.0 nTPM
Allen mouse:21.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1057.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 791.8
2666 Male, age 74, left hemisphere 1231.7
2019 Male, age 18, unknown 1084.4
2586 Male, age 75, left hemisphere 891.1
1827 Male, age 72, unknown 825.9
2411 Female, age 72, unknown 771.7
2828 Female, age 72, unknown 746.5
2219 Male, age 76, both hemispheres 652.8
1870 Female, age 42, unknown 598.1
1830 Male, age 51, unknown 572.1
1833 Male, age 53, unknown 544.2
Dorsal raphe nucleus
nTPM: 835.8
2298 Female, age 72, unknown 1000.3
2047 Male, age 72, unknown 913.9
2750 Male, age 76, both hemispheres 891.5
1828 Male, age 53, unknown 885.6
2016 Female, age 72, unknown 487.8
Inferior colliculus
nTPM: 530.4
2097 Female, age 72, unknown 575.4
1890 Male, age 53, unknown 546.1
1848 Female, age 42, unknown 530.8
2849 Male, age 72, unknown 469.3
Median raphe nucleus
nTPM: 1057.5
2220 Male, age 76, midline 1057.5
Periaquaductal grey, anterior
nTPM: 758.6
1795 Male, age 51, unknown 857.6
2502 Female, age 75, unknown 744.4
1947 Male, age 18, unknown 673.9
Periaquaductal grey, dorsal
nTPM: 546.0
1831 Male, age 72, unknown 640.8
2850 Male, age 76, both hemispheres 549.5
2464 Female, age 72, unknown 508.3
1840 Male, age 53, unknown 485.5
Periaquaductal grey, lateral
nTPM: 508.7
2272 Male, age 74, both hemispheres 595.5
2053 Male, age 18, unknown 491.0
2140 Male, age 76, both hemispheres 439.5
Pretectal area
nTPM: 860.1
1816 Male, age 51, unknown 1365.6
1817 Female, age 42, unknown 1205.2
1944 Female, age 72, unknown 1203.1
2007 Male, age 72, unknown 1199.2
1815 Male, age 53, unknown 968.7
2667 Female, age 75, unknown 699.4
2273 Male, age 74, both hemispheres 650.8
2407 Male, age 75, both hemispheres 649.1
2224 Female, age 72, unknown 643.9
2825 Male, age 18, unknown 505.8
2316 Male, age 76, right hemisphere 370.3
Red nucleus
nTPM: 668.7
2785 Male, age 18, unknown 1040.5
2584 Male, age 75, left hemisphere 827.9
1821 Female, age 72, unknown 802.5
2588 Male, age 74, left hemisphere 662.8
2503 Female, age 72, unknown 650.9
1865 Male, age 51, unknown 639.1
1954 Female, age 42, unknown 616.5
2725 Female, age 75, unknown 577.4
1904 Male, age 53, unknown 576.9
2227 Male, age 72, unknown 556.8
2769 Male, age 72, unknown 548.0
2823 Male, age 76, right hemisphere 525.1
Substantia nigra
nTPM: 889.1
1941 Male, age 53, unknown 1240.8
1916 Female, age 42, unknown 1103.4
1889 Female, age 72, unknown 1097.6
2583 Male, age 75, right hemisphere 904.6
1851 Male, age 51, unknown 879.8
2241 Male, age 72, unknown 818.0
2665 Male, age 74, both hemispheres 792.9
2409 Female, age 72, unknown 731.9
2590 Female, age 75, unknown 696.3
2699 Male, age 18, unknown 626.2
Superior colliculus
nTPM: 741.3
2668 Female, age 75, unknown 1176.7
2087 Female, age 72, unknown 972.4
2261 Male, age 18, unknown 804.2
1796 Male, age 53, unknown 799.5
1913 Female, age 42, unknown 695.3
2587 Male, age 74, left hemisphere 669.0
2664 Male, age 75, both hemispheres 646.2
1995 Male, age 72, unknown 561.2
1839 Male, age 51, unknown 548.0
1895 Male, age 76, right hemisphere 540.2
Ventral tegmental area
nTPM: 772.8
2218 Male, age 76, both hemispheres 864.0
2410 Female, age 72, unknown 848.0
1915 Female, age 42, unknown 818.6
2223 Female, age 72, unknown 774.3
1942 Male, age 51, unknown 701.2
2021 Male, age 53, unknown 630.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.3
Samples: 139

Max nTPM: 394.0
Min nTPM: 39.0
Std nTPM: 48.9
Median nTPM: 85.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 394.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 358.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 254.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 222.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 206.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 174.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 168.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 159.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 159.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 158.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 157.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 358.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 358.6
FF:10158-103A5 76 years, female 358.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 432.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 432.7
Samples: 4

Max nTPM: 628.1
Min nTPM: 234.6
Sample A Female 583.8
Sample B Female 284.2
Sample C Male 628.1
Sample D Male 234.6
Midbrain
nTPM: 424.2
Samples: 4

Max nTPM: 689.6
Min nTPM: 282.8
Sample A Female 373.6
Sample B Female 282.8
Sample C Male 689.6
Sample D Male 350.6
Periaqueductal gray
nTPM: 276.1
Samples: 3

Max nTPM: 374.3
Min nTPM: 217.1
Sample B Female 237.0
Sample C Male 374.3
Sample D Male 217.1
Superior colliculi
nTPM: 430.7
Samples: 4

Max nTPM: 708.9
Min nTPM: 213.4
Sample A Female 366.3
Sample B Female 213.4
Sample C Male 708.9
Sample D Male 434.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 127.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.0
Samples: 4

Max nTPM: 143.6
Min nTPM: 89.4
Sample A Male 89.4
Sample B Male 143.6
Sample C Female 135.9
Sample D Female 139.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.7
71570737 Antisense, RP_050505_01_H06, Mouse strain C57BL/6J (56 days, male) 25.1
73834355 Antisense, RP_051212_03_G08, Mouse strain C57BL/6J (56 days, male) 18.4

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