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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
63.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 63.7
Samples: 152
Max nTPM: 198.5
Min nTPM: 15.1
Std nTPM: 26.1
Median nTPM: 58.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
198.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
183.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
147.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
140.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
134.0
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
122.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
116.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
113.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
109.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
104.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
102.7
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
100.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
98.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
92.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
92.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
89.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
89.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
88.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
86.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
86.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
84.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
84.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
84.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
80.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
79.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
79.3
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
79.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
77.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
76.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
76.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
75.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
75.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
75.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
75.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
73.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
73.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
73.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
73.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
72.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
71.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
71.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
69.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
69.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
69.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
68.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
68.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
68.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
67.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
67.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
67.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
65.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
65.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
65.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
65.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
64.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
64.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
64.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
64.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
63.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
63.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
63.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
63.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
62.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
62.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
62.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
62.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
62.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
62.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
61.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
61.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
61.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
59.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
59.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
59.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
59.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
59.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
58.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
58.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
58.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
58.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
57.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
57.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
56.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
56.0
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
56.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
55.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
55.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
54.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
53.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
53.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
53.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
53.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
53.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
53.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
52.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
52.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
52.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
52.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
52.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
51.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
50.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
50.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
50.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
49.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
49.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
49.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
49.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
49.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
48.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
48.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
48.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
48.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
47.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
47.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
47.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
46.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
46.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
46.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
46.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
45.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
45.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
45.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
45.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
45.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
45.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
45.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
44.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
44.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
43.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
43.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
43.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
42.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
42.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
42.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
41.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
39.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
39.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
38.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
37.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
37.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
37.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
37.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
35.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
35.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
35.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
33.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
33.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
33.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
32.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
32.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
28.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
15.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
98.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 98.9
Samples: 4
Max nTPM: 121.1
Min nTPM: 84.1
Sample A
Male
121.1
Sample B
Male
84.1
Sample C
Female
90.7
Sample D
Female
99.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
