MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.8 nTPM
HPA Brain:46.0 nTPM
GTEx:17.8 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:59.9 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.6
2019 Male, age 18, unknown 59.0
2666 Male, age 74, left hemisphere 43.7
1870 Female, age 42, unknown 31.0
2411 Female, age 72, unknown 30.8
2828 Female, age 72, unknown 30.3
1827 Male, age 72, unknown 30.1
2219 Male, age 76, both hemispheres 29.8
1830 Male, age 51, unknown 28.0
1833 Male, age 53, unknown 27.6
2586 Male, age 75, left hemisphere 25.4
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 36.6
2047 Male, age 72, unknown 29.1
2298 Female, age 72, unknown 28.2
2016 Female, age 72, unknown 26.6
1828 Male, age 53, unknown 24.4
Inferior colliculus
nTPM: 29.3
2097 Female, age 72, unknown 33.4
1890 Male, age 53, unknown 29.0
2849 Male, age 72, unknown 28.9
1848 Female, age 42, unknown 25.8
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 25.0
1795 Male, age 51, unknown 31.0
2502 Female, age 75, unknown 28.4
1947 Male, age 18, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 27.7
1840 Male, age 53, unknown 30.3
1831 Male, age 72, unknown 30.0
2464 Female, age 72, unknown 30.0
2850 Male, age 76, both hemispheres 20.4
Periaquaductal grey, lateral
nTPM: 27.7
2272 Male, age 74, both hemispheres 32.7
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 22.1
Pretectal area
nTPM: 46.0
1817 Female, age 42, unknown 70.2
2007 Male, age 72, unknown 64.2
1944 Female, age 72, unknown 63.1
1816 Male, age 51, unknown 57.7
1815 Male, age 53, unknown 56.3
2667 Female, age 75, unknown 54.9
2316 Male, age 76, right hemisphere 30.6
2273 Male, age 74, both hemispheres 30.4
2224 Female, age 72, unknown 29.8
2407 Male, age 75, both hemispheres 25.2
2825 Male, age 18, unknown 23.1
Red nucleus
nTPM: 36.9
2785 Male, age 18, unknown 60.8
1821 Female, age 72, unknown 40.7
2823 Male, age 76, right hemisphere 40.4
1865 Male, age 51, unknown 39.9
2503 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 37.0
2588 Male, age 74, left hemisphere 36.7
1904 Male, age 53, unknown 33.4
2769 Male, age 72, unknown 32.4
2227 Male, age 72, unknown 31.4
2584 Male, age 75, left hemisphere 28.3
2725 Female, age 75, unknown 24.6
Substantia nigra
nTPM: 32.9
1889 Female, age 72, unknown 53.5
2665 Male, age 74, both hemispheres 47.4
2409 Female, age 72, unknown 39.3
2583 Male, age 75, right hemisphere 35.4
1941 Male, age 53, unknown 35.2
2699 Male, age 18, unknown 28.1
1851 Male, age 51, unknown 26.6
2241 Male, age 72, unknown 25.3
1916 Female, age 42, unknown 22.3
2590 Female, age 75, unknown 16.1
Superior colliculus
nTPM: 43.6
2668 Female, age 75, unknown 76.5
2087 Female, age 72, unknown 51.6
1913 Female, age 42, unknown 50.6
1995 Male, age 72, unknown 42.7
1796 Male, age 53, unknown 41.2
2261 Male, age 18, unknown 40.9
1895 Male, age 76, right hemisphere 38.2
2587 Male, age 74, left hemisphere 38.0
2664 Male, age 75, both hemispheres 28.6
1839 Male, age 51, unknown 27.9
Ventral tegmental area
nTPM: 30.8
2223 Female, age 72, unknown 39.5
1942 Male, age 51, unknown 32.2
2410 Female, age 72, unknown 30.0
2218 Male, age 76, both hemispheres 28.5
2021 Male, age 53, unknown 28.3
1915 Female, age 42, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.8
Samples: 139

Max nTPM: 39.6
Min nTPM: 3.6
Std nTPM: 5.6
Median nTPM: 17.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 32.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 31.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 29.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 29.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 28.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 28.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 21.1
Sample A Female 29.9
Sample B Female 21.1
Sample C Male 26.8
Sample D Male 34.7
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 49.7
Min nTPM: 24.7
Sample A Female 49.7
Sample B Female 26.1
Sample C Male 43.1
Sample D Male 24.7
Periaqueductal gray
nTPM: 24.6
Samples: 3

Max nTPM: 27.5
Min nTPM: 21.7
Sample B Female 21.7
Sample C Male 27.5
Sample D Male 24.7
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 36.4
Min nTPM: 18.8
Sample A Female 31.3
Sample B Female 18.8
Sample C Male 36.4
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.9
Samples: 4

Max nTPM: 70.4
Min nTPM: 50.6
Sample A Male 50.6
Sample B Male 52.6
Sample C Female 70.4
Sample D Female 66.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
73769321 Antisense, RP_051121_04_B06, Mouse strain C57BL/6J (56 days, male) 2.7
69837912 Antisense, RP_050222_02_F11, Mouse strain C57BL/6J (56 days, male) 2.3

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