MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA Brain:31.0 nTPM
GTEx:32.6 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:27.2 nTPM
Mouse:53.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2411 Female, age 72, unknown 30.9
1827 Male, age 72, unknown 29.9
2019 Male, age 18, unknown 28.6
2219 Male, age 76, both hemispheres 26.7
1833 Male, age 53, unknown 25.2
1870 Female, age 42, unknown 24.5
2666 Male, age 74, left hemisphere 24.1
1830 Male, age 51, unknown 23.4
2828 Female, age 72, unknown 22.9
2586 Male, age 75, left hemisphere 21.5
Dorsal raphe nucleus
nTPM: 28.3
2298 Female, age 72, unknown 34.4
1828 Male, age 53, unknown 27.9
2750 Male, age 76, both hemispheres 27.9
2047 Male, age 72, unknown 27.8
2016 Female, age 72, unknown 23.4
Inferior colliculus
nTPM: 25.2
2097 Female, age 72, unknown 30.1
1848 Female, age 42, unknown 24.3
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 22.9
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Periaquaductal grey, anterior
nTPM: 26.0
1947 Male, age 18, unknown 28.4
2502 Female, age 75, unknown 25.1
1795 Male, age 51, unknown 24.6
Periaquaductal grey, dorsal
nTPM: 23.9
1840 Male, age 53, unknown 26.3
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 21.1
Periaquaductal grey, lateral
nTPM: 25.0
2272 Male, age 74, both hemispheres 29.6
2140 Male, age 76, both hemispheres 23.5
2053 Male, age 18, unknown 22.0
Pretectal area
nTPM: 28.3
1816 Male, age 51, unknown 32.3
2007 Male, age 72, unknown 31.2
1817 Female, age 42, unknown 31.0
1944 Female, age 72, unknown 30.5
2273 Male, age 74, both hemispheres 30.5
2224 Female, age 72, unknown 29.9
2667 Female, age 75, unknown 29.4
1815 Male, age 53, unknown 28.5
2825 Male, age 18, unknown 25.0
2407 Male, age 75, both hemispheres 22.7
2316 Male, age 76, right hemisphere 20.2
Red nucleus
nTPM: 24.8
1821 Female, age 72, unknown 29.7
2725 Female, age 75, unknown 28.3
2785 Male, age 18, unknown 27.4
2588 Male, age 74, left hemisphere 27.3
2823 Male, age 76, right hemisphere 25.3
1954 Female, age 42, unknown 24.2
2503 Female, age 72, unknown 24.2
1904 Male, age 53, unknown 23.2
2227 Male, age 72, unknown 23.2
2769 Male, age 72, unknown 22.9
1865 Male, age 51, unknown 22.1
2584 Male, age 75, left hemisphere 19.7
Substantia nigra
nTPM: 31.0
1916 Female, age 42, unknown 41.3
1941 Male, age 53, unknown 36.0
2241 Male, age 72, unknown 34.6
1851 Male, age 51, unknown 34.1
1889 Female, age 72, unknown 30.8
2665 Male, age 74, both hemispheres 28.5
2409 Female, age 72, unknown 27.4
2699 Male, age 18, unknown 26.8
2590 Female, age 75, unknown 26.2
2583 Male, age 75, right hemisphere 24.1
Superior colliculus
nTPM: 24.9
1895 Male, age 76, right hemisphere 29.8
1796 Male, age 53, unknown 26.8
2087 Female, age 72, unknown 26.5
2261 Male, age 18, unknown 26.4
2587 Male, age 74, left hemisphere 26.3
1839 Male, age 51, unknown 26.2
2668 Female, age 75, unknown 24.8
1913 Female, age 42, unknown 22.7
1995 Male, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 19.4
Ventral tegmental area
nTPM: 29.5
2218 Male, age 76, both hemispheres 34.3
2410 Female, age 72, unknown 33.8
1915 Female, age 42, unknown 32.6
1942 Male, age 51, unknown 27.7
2223 Female, age 72, unknown 25.0
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.6
Samples: 139

Max nTPM: 65.5
Min nTPM: 16.3
Std nTPM: 10.5
Median nTPM: 30.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 60.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 59.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 53.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 50.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 50.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 32.9
Min nTPM: 17.7
Sample A Female 32.9
Sample B Female 17.7
Sample C Male 22.6
Sample D Male 19.0
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 18.2
Sample A Female 23.7
Sample B Female 18.2
Sample C Male 28.4
Sample D Male 24.0
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 20.4
Min nTPM: 16.5
Sample B Female 19.1
Sample C Male 20.4
Sample D Male 16.5
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 31.1
Min nTPM: 22.6
Sample A Female 30.8
Sample B Female 22.6
Sample C Male 31.1
Sample D Male 24.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.7
Samples: 4

Max nTPM: 56.8
Min nTPM: 51.9
Sample A Male 56.8
Sample B Male 51.9
Sample C Female 52.8
Sample D Female 53.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70439069 Antisense, RP_050614_03_A08, Mouse strain C57BL/6J (56 days, male) 0.7

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