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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
252.7
nTPM
Monaco:
102.3
nTPM
Schmiedel:
99.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
252.7
HPA sample
nTPM
gdT-cell nTPM: 15.7
Samples: 6
Max nTPM: 30.7
Min nTPM: 3.2
P10809_1007
5.5
P10809_1022
7.2
P10809_1041
25.2
P10809_1060
22.6
P10809_1077
30.7
P10809_1098
3.2
MAIT T-cell nTPM: 99.9
Samples: 6
Max nTPM: 138.0
Min nTPM: 54.0
P10809_1006
68.5
P10809_1024
138.0
P10809_1043
121.3
P10809_1062
100.7
P10809_1083
116.7
P10809_1097
54.0
Memory CD4 T-cell nTPM: 58.6
Samples: 6
Max nTPM: 77.1
Min nTPM: 41.3
P10809_1014
70.2
P10809_1026
55.5
P10809_1045
77.1
P10809_1064
54.0
P10809_1086
41.3
P10809_1113
53.5
Memory CD8 T-cell nTPM: 44.2
Samples: 5
Max nTPM: 59.4
Min nTPM: 29.5
P10809_1012
37.8
P10809_1027
59.4
P10809_1046
46.9
P10809_1065
29.5
P10809_1111
47.4
Naive CD4 T-cell nTPM: 2.5
Samples: 6
Max nTPM: 4.3
Min nTPM: 0.7
P10809_1015
0.9
P10809_1030
2.4
P10809_1049
4.3
P10809_1068
0.7
P10809_1085
3.8
P10809_1112
2.7
Naive CD8 T-cell nTPM: 8.3
Samples: 6
Max nTPM: 14.7
Min nTPM: 3.1
P10809_1016
3.1
P10809_1031
10.8
P10809_1050
8.8
P10809_1069
14.7
P10809_1087
7.0
P10809_1110
5.5
T-reg nTPM: 252.6
Samples: 6
Max nTPM: 301.9
Min nTPM: 221.9
P10809_1018
236.7
P10809_1037
264.3
P10809_1056
221.9
P10809_1075
301.9
P10809_1094
240.1
P10809_1106
250.9
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
102.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 27.8
Samples: 4
Max nTPM: 51.2
Min nTPM: 7.2
RHH5202_R3573
51.2
RHH5230_R3602
7.2
RHH5259_R3631
29.1
RHH5288_R3660
23.7
Effector memory CD8 T-cell nTPM: 18.9
Samples: 4
Max nTPM: 30.7
Min nTPM: 7.3
RHH5203_R3574
26.9
RHH5231_R3603
7.3
RHH5260_R3632
10.8
RHH5289_R3661
30.7
MAIT T-cell nTPM: 77.3
Samples: 4
Max nTPM: 139.1
Min nTPM: 27.6
RHH5233_R3605
27.6
RHH5205_R3576
88.6
RHH5262_R3634
53.8
RHH5297_R3663
139.1
Memory CD4 T-cell TFH nTPM: 19.1
Samples: 4
Max nTPM: 28.6
Min nTPM: 14.7
RHH5300_R3666
18.1
RHH5236_R3608
15.0
RHH5265_R3637
14.7
RHH5208_R3579
28.6
Memory CD4 T-cell Th1 nTPM: 26.5
Samples: 4
Max nTPM: 62.1
Min nTPM: 7.4
RHH5210_R3581
19.5
RHH5302_R3668
62.1
RHH5238_R3610
7.4
RHH5267_R3639
17.0
Memory CD4 T-cell Th1/Th17 nTPM: 86.4
Samples: 4
Max nTPM: 137.1
Min nTPM: 17.2
RHH5303_R3669
137.1
RHH5211_R3582
125.4
RHH5239_R3611
17.2
RHH5268_R3640
65.8
Memory CD4 T-cell Th17 nTPM: 102.3
Samples: 4
Max nTPM: 209.4
Min nTPM: 44.9
RHH5304_R3670
87.1
RHH5212_R3583
209.4
RHH5240_R3612
44.9
RHH5269_R3641
67.7
Memory CD4 T-cell Th2 nTPM: 8.9
Samples: 4
Max nTPM: 12.7
Min nTPM: 2.3
RHH5305_R3671
9.5
RHH5213_R3584
12.7
RHH5241_R3613
2.3
RHH5270_R3642
11.2
Naive CD4 T-cell nTPM: 3.0
Samples: 4
Max nTPM: 5.6
Min nTPM: 1.9
RHH5306_R3672
5.6
RHH5214_R3585
1.9
RHH5242_R3614
2.3
RHH5271_R3643
2.0
Naive CD8 T-cell nTPM: 3.4
Samples: 4
Max nTPM: 6.5
Min nTPM: 1.0
RHH5201_R3572
1.0
RHH5229_R3601
4.8
RHH5258_R3630
1.2
RHH5287_R3659
6.5
Non-Vd2 gdTCR nTPM: 59.7
Samples: 4
Max nTPM: 119.1
Min nTPM: 17.0
RHH5235_R3607
17.0
RHH5264_R3636
52.1
RHH5207_R3578
50.6
RHH5299_R3665
119.1
T-reg nTPM: 66.0
Samples: 4
Max nTPM: 109.6
Min nTPM: 35.2
RHH5301_R3667
109.6
RHH5237_R3609
35.2
RHH5266_R3638
50.6
RHH5209_R3580
68.6
Terminal effector memory CD4 T-cell nTPM: 10.1
Samples: 2
Max nTPM: 16.3
Min nTPM: 3.9
RHH5243_R3615
3.9
RHH5272_R3644
16.3
Terminal effector memory CD8 T-cell nTPM: 34.8
Samples: 4
Max nTPM: 50.9
Min nTPM: 6.1
RHH5232_R3604
6.1
RHH5204_R3575
50.9
RHH5261_R3633
50.1
RHH5296_R3662
32.0
Vd2 gdTCR nTPM: 17.9
Samples: 4
Max nTPM: 32.4
Min nTPM: 6.9
RHH5234_R3606
6.9
RHH5206_R3577
32.4
RHH5263_R3635
13.2
RHH5298_R3664
19.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
