MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:38.4 nTPM
GTEx:12.3 nTPM
FANTOM5:13.9 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:0.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
2828 Female, age 72, unknown 24.9
1833 Male, age 53, unknown 20.3
1827 Male, age 72, unknown 18.9
1870 Female, age 42, unknown 18.9
1830 Male, age 51, unknown 18.6
2411 Female, age 72, unknown 16.7
2666 Male, age 74, left hemisphere 16.2
2219 Male, age 76, both hemispheres 15.4
2586 Male, age 75, left hemisphere 14.6
2019 Male, age 18, unknown 10.1
Dorsal raphe nucleus
nTPM: 27.4
2016 Female, age 72, unknown 33.6
2298 Female, age 72, unknown 31.6
1828 Male, age 53, unknown 27.4
2047 Male, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 18.1
Inferior colliculus
nTPM: 23.4
2849 Male, age 72, unknown 35.8
1848 Female, age 42, unknown 26.3
1890 Male, age 53, unknown 18.5
2097 Female, age 72, unknown 13.1
Median raphe nucleus
nTPM: 20.9
2220 Male, age 76, midline 20.9
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 28.2
1795 Male, age 51, unknown 23.6
2502 Female, age 75, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 36.4
2850 Male, age 76, both hemispheres 54.6
1840 Male, age 53, unknown 43.6
2464 Female, age 72, unknown 27.8
1831 Male, age 72, unknown 19.7
Periaquaductal grey, lateral
nTPM: 38.4
2140 Male, age 76, both hemispheres 50.6
2272 Male, age 74, both hemispheres 34.2
2053 Male, age 18, unknown 30.3
Pretectal area
nTPM: 23.9
2273 Male, age 74, both hemispheres 44.4
2825 Male, age 18, unknown 33.6
2224 Female, age 72, unknown 32.3
2667 Female, age 75, unknown 27.3
2316 Male, age 76, right hemisphere 22.8
2407 Male, age 75, both hemispheres 20.3
1816 Male, age 51, unknown 18.2
1815 Male, age 53, unknown 18.1
1944 Female, age 72, unknown 17.4
1817 Female, age 42, unknown 16.9
2007 Male, age 72, unknown 11.8
Red nucleus
nTPM: 15.6
2725 Female, age 75, unknown 22.2
2227 Male, age 72, unknown 18.5
2503 Female, age 72, unknown 18.1
1954 Female, age 42, unknown 17.8
2769 Male, age 72, unknown 16.8
2823 Male, age 76, right hemisphere 16.2
1904 Male, age 53, unknown 15.8
1821 Female, age 72, unknown 15.2
1865 Male, age 51, unknown 15.1
2588 Male, age 74, left hemisphere 14.7
2785 Male, age 18, unknown 9.8
2584 Male, age 75, left hemisphere 7.0
Substantia nigra
nTPM: 22.2
2699 Male, age 18, unknown 39.2
2409 Female, age 72, unknown 23.3
2241 Male, age 72, unknown 23.1
1916 Female, age 42, unknown 22.6
2590 Female, age 75, unknown 22.2
2665 Male, age 74, both hemispheres 20.3
1851 Male, age 51, unknown 19.3
2583 Male, age 75, right hemisphere 19.1
1941 Male, age 53, unknown 16.7
1889 Female, age 72, unknown 16.0
Superior colliculus
nTPM: 19.3
1839 Male, age 51, unknown 23.7
2664 Male, age 75, both hemispheres 23.7
1995 Male, age 72, unknown 23.4
1796 Male, age 53, unknown 20.7
2587 Male, age 74, left hemisphere 20.5
1895 Male, age 76, right hemisphere 19.0
2087 Female, age 72, unknown 18.9
2261 Male, age 18, unknown 18.2
1913 Female, age 42, unknown 13.2
2668 Female, age 75, unknown 11.4
Ventral tegmental area
nTPM: 19.4
2218 Male, age 76, both hemispheres 23.3
1915 Female, age 42, unknown 20.7
2021 Male, age 53, unknown 20.2
1942 Male, age 51, unknown 19.8
2410 Female, age 72, unknown 17.3
2223 Female, age 72, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 30.4
Min nTPM: 1.4
Std nTPM: 6.4
Median nTPM: 11.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 29.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 28.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 27.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 25.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 25.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 24.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 24.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.9
FF:10158-103A5 76 years, female 13.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.9
Sample C Male 1.0
Sample D Male 1.6
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.2
Sample A Female 1.5
Sample B Female 2.6
Sample C Male 1.2
Sample D Male 1.6
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 11.2
Min nTPM: 7.1
Sample B Female 7.1
Sample C Male 11.2
Sample D Male 9.2
Superior colliculi
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 0.9
Sample C Male 1.3
Sample D Male 1.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.4
Sample A Male 1.1
Sample B Male 0.4
Sample C Female 0.4
Sample D Female 1.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74514282 Antisense, RP_060208_02_C05, Mouse strain C57BL/6J (56 days, male) 0.2
74579987 Antisense, RP_060215_01_F01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org