MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:11.6 nTPM
GTEx:11.0 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:88.0 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.2
2411 Female, age 72, unknown 13.0
2586 Male, age 75, left hemisphere 11.7
1827 Male, age 72, unknown 11.5
2019 Male, age 18, unknown 10.2
1870 Female, age 42, unknown 9.8
2828 Female, age 72, unknown 9.0
1833 Male, age 53, unknown 7.3
2219 Male, age 76, both hemispheres 7.2
1830 Male, age 51, unknown 6.8
2666 Male, age 74, left hemisphere 4.9
Dorsal raphe nucleus
nTPM: 10.2
2298 Female, age 72, unknown 15.5
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 9.2
2750 Male, age 76, both hemispheres 9.2
2016 Female, age 72, unknown 7.5
Inferior colliculus
nTPM: 9.0
2097 Female, age 72, unknown 10.2
1848 Female, age 42, unknown 9.9
1890 Male, age 53, unknown 8.3
2849 Male, age 72, unknown 7.5
Median raphe nucleus
nTPM: 9.3
2220 Male, age 76, midline 9.3
Periaquaductal grey, anterior
nTPM: 11.6
1947 Male, age 18, unknown 12.6
1795 Male, age 51, unknown 11.2
2502 Female, age 75, unknown 11.1
Periaquaductal grey, dorsal
nTPM: 10.1
2464 Female, age 72, unknown 14.3
1840 Male, age 53, unknown 10.4
2850 Male, age 76, both hemispheres 8.6
1831 Male, age 72, unknown 7.1
Periaquaductal grey, lateral
nTPM: 10.6
2272 Male, age 74, both hemispheres 12.2
2140 Male, age 76, both hemispheres 10.2
2053 Male, age 18, unknown 9.5
Pretectal area
nTPM: 10.0
2273 Male, age 74, both hemispheres 11.6
2316 Male, age 76, right hemisphere 11.5
2667 Female, age 75, unknown 11.1
2007 Male, age 72, unknown 10.8
1815 Male, age 53, unknown 10.6
2224 Female, age 72, unknown 10.5
1944 Female, age 72, unknown 10.2
1817 Female, age 42, unknown 9.4
1816 Male, age 51, unknown 9.0
2825 Male, age 18, unknown 8.3
2407 Male, age 75, both hemispheres 6.8
Red nucleus
nTPM: 8.2
1865 Male, age 51, unknown 11.0
2725 Female, age 75, unknown 9.4
2227 Male, age 72, unknown 9.1
2769 Male, age 72, unknown 9.1
1821 Female, age 72, unknown 8.8
2503 Female, age 72, unknown 8.4
1904 Male, age 53, unknown 8.3
1954 Female, age 42, unknown 8.3
2785 Male, age 18, unknown 8.3
2823 Male, age 76, right hemisphere 7.0
2584 Male, age 75, left hemisphere 6.2
2588 Male, age 74, left hemisphere 4.0
Substantia nigra
nTPM: 8.0
2665 Male, age 74, both hemispheres 10.1
1889 Female, age 72, unknown 9.3
2241 Male, age 72, unknown 9.1
1916 Female, age 42, unknown 8.8
1851 Male, age 51, unknown 8.4
1941 Male, age 53, unknown 8.3
2590 Female, age 75, unknown 8.0
2583 Male, age 75, right hemisphere 6.5
2699 Male, age 18, unknown 6.3
2409 Female, age 72, unknown 5.5
Superior colliculus
nTPM: 8.5
1796 Male, age 53, unknown 11.2
2587 Male, age 74, left hemisphere 11.1
2261 Male, age 18, unknown 10.5
1895 Male, age 76, right hemisphere 10.4
2087 Female, age 72, unknown 8.8
1839 Male, age 51, unknown 7.7
1913 Female, age 42, unknown 7.1
1995 Male, age 72, unknown 6.7
2668 Female, age 75, unknown 6.4
2664 Male, age 75, both hemispheres 4.8
Ventral tegmental area
nTPM: 9.4
2410 Female, age 72, unknown 13.2
1942 Male, age 51, unknown 9.9
1915 Female, age 42, unknown 8.9
2223 Female, age 72, unknown 8.8
2218 Male, age 76, both hemispheres 8.4
2021 Male, age 53, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 29.5
Min nTPM: 3.2
Std nTPM: 4.4
Median nTPM: 10.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 29.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 23.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 23.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 21.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 20.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 18.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 18.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 44.7
Min nTPM: 22.9
Sample A Female 44.7
Sample B Female 25.9
Sample C Male 29.8
Sample D Male 22.9
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 43.6
Min nTPM: 29.0
Sample A Female 43.6
Sample B Female 29.0
Sample C Male 35.7
Sample D Male 30.4
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 31.4
Min nTPM: 24.7
Sample B Female 24.7
Sample C Male 31.4
Sample D Male 27.0
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 45.1
Min nTPM: 32.0
Sample A Female 45.1
Sample B Female 37.8
Sample C Male 37.4
Sample D Male 32.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.0
Samples: 4

Max nTPM: 93.2
Min nTPM: 80.3
Sample A Male 91.9
Sample B Male 86.5
Sample C Female 80.3
Sample D Female 93.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69102926 Antisense, RP_050316_01_H07, Mouse strain C57BL/6J (56 days, male) 3.2

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