MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:27.4 nTPM
GTEx:28.3 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:14.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2411 Female, age 72, unknown 29.7
2019 Male, age 18, unknown 28.3
2586 Male, age 75, left hemisphere 28.3
1827 Male, age 72, unknown 27.6
2666 Male, age 74, left hemisphere 26.4
2828 Female, age 72, unknown 26.3
1870 Female, age 42, unknown 25.8
1833 Male, age 53, unknown 25.4
1830 Male, age 51, unknown 24.1
2219 Male, age 76, both hemispheres 23.0
Dorsal raphe nucleus
nTPM: 25.8
2298 Female, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 25.8
1828 Male, age 53, unknown 25.3
2047 Male, age 72, unknown 24.8
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 25.7
2097 Female, age 72, unknown 28.4
1848 Female, age 42, unknown 25.4
1890 Male, age 53, unknown 24.9
2849 Male, age 72, unknown 23.9
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 26.2
1947 Male, age 18, unknown 27.7
1795 Male, age 51, unknown 25.6
2502 Female, age 75, unknown 25.2
Periaquaductal grey, dorsal
nTPM: 23.7
1840 Male, age 53, unknown 25.7
2464 Female, age 72, unknown 25.5
1831 Male, age 72, unknown 22.7
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 24.4
2272 Male, age 74, both hemispheres 24.7
2140 Male, age 76, both hemispheres 24.4
2053 Male, age 18, unknown 24.2
Pretectal area
nTPM: 27.4
2007 Male, age 72, unknown 32.8
1817 Female, age 42, unknown 32.6
1816 Male, age 51, unknown 31.7
1815 Male, age 53, unknown 28.1
2667 Female, age 75, unknown 27.9
1944 Female, age 72, unknown 27.7
2224 Female, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 26.5
2825 Male, age 18, unknown 23.5
2316 Male, age 76, right hemisphere 22.5
2407 Male, age 75, both hemispheres 21.6
Red nucleus
nTPM: 26.2
1821 Female, age 72, unknown 28.8
2785 Male, age 18, unknown 27.6
1954 Female, age 42, unknown 27.0
2725 Female, age 75, unknown 27.0
2588 Male, age 74, left hemisphere 26.7
1865 Male, age 51, unknown 26.2
1904 Male, age 53, unknown 26.1
2503 Female, age 72, unknown 25.8
2823 Male, age 76, right hemisphere 25.7
2227 Male, age 72, unknown 25.3
2769 Male, age 72, unknown 25.1
2584 Male, age 75, left hemisphere 23.1
Substantia nigra
nTPM: 26.4
1916 Female, age 42, unknown 31.9
1889 Female, age 72, unknown 28.9
1851 Male, age 51, unknown 28.1
2241 Male, age 72, unknown 26.9
1941 Male, age 53, unknown 26.8
2409 Female, age 72, unknown 25.6
2590 Female, age 75, unknown 25.0
2665 Male, age 74, both hemispheres 24.9
2583 Male, age 75, right hemisphere 23.7
2699 Male, age 18, unknown 22.5
Superior colliculus
nTPM: 24.9
2261 Male, age 18, unknown 28.2
1796 Male, age 53, unknown 27.1
2087 Female, age 72, unknown 27.1
2668 Female, age 75, unknown 25.6
1839 Male, age 51, unknown 24.4
1913 Female, age 42, unknown 24.3
1895 Male, age 76, right hemisphere 24.2
2587 Male, age 74, left hemisphere 24.2
1995 Male, age 72, unknown 23.8
2664 Male, age 75, both hemispheres 20.2
Ventral tegmental area
nTPM: 26.1
2410 Female, age 72, unknown 31.5
2218 Male, age 76, both hemispheres 27.1
1915 Female, age 42, unknown 26.2
2223 Female, age 72, unknown 25.5
1942 Male, age 51, unknown 23.7
2021 Male, age 53, unknown 22.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 57.8
Min nTPM: 16.9
Std nTPM: 5.5
Median nTPM: 27.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 37.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 37.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 36.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 35.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.1
Sample A Female 19.4
Sample B Female 13.1
Sample C Male 15.4
Sample D Male 15.6
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.5
Sample A Female 22.0
Sample B Female 14.9
Sample C Male 18.0
Sample D Male 14.5
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 16.0
Min nTPM: 13.2
Sample B Female 14.3
Sample C Male 16.0
Sample D Male 13.2
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.9
Sample A Female 19.4
Sample B Female 16.9
Sample C Male 17.3
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.0
Sample A Male 15.3
Sample B Male 13.0
Sample C Female 14.0
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69672120 Antisense, RP_050428_03_A10, Mouse strain C57BL/6J (56 days, male) 0.5

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