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NIP7
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  • NIP7
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NIP7
Synonyms CGI-37, FLJ10296, HSPC031, KD93
Gene descriptioni

Full gene name according to HGNC.

Nucleolar pre-rRNA processing protein NIP7
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband q22.1
Chromosome location (bp) 69337996 - 69343106
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000132603 (version 109)
Entrez gene 51388
HGNC HGNC:24328
UniProt Q9Y221 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y221
GeneCards NIP7
Antibodypedia NIP7 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ribosome biogenesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables RNA binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Located in cytosol; nucleolus; and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NIP7-201
ENSP00000254940
ENST00000254940
Q9Y221
[Direct mapping] 60S ribosome subunit biogenesis protein NIP7 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005829 [cytosol]
GO:0030687 [preribosome, large subunit precursor]
GO:0042254 [ribosome biogenesis]
GO:0042255 [ribosome assembly]
GO:0042273 [ribosomal large subunit biogenesis]
Show all
180 aa
20.5 kDa
No 0
NIP7-202
ENSP00000254941
ENST00000254941
Q9Y221
[Direct mapping] 60S ribosome subunit biogenesis protein NIP7 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005829 [cytosol]
GO:0030687 [preribosome, large subunit precursor]
GO:0042254 [ribosome biogenesis]
GO:0042255 [ribosome assembly]
GO:0042273 [ribosomal large subunit biogenesis]
Show all
133 aa
15.2 kDa
No 0
NIP7-204
ENSP00000464159
ENST00000562523
J3QRD6
[Direct mapping] 60S ribosome subunit biogenesis protein NIP7 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
Show all
70 aa
8 kDa
No 0
NIP7-207
ENSP00000464348
ENST00000567202
J3QRR4
[Direct mapping] 60S ribosome subunit biogenesis protein NIP7 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003723 [RNA binding]
Show all
79 aa
8.9 kDa
No 0
NIP7-208
ENSP00000463739
ENST00000569637
J3QLW7
[Direct mapping] 60S ribosome subunit biogenesis protein NIP7 homolog
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
110 aa
12.5 kDa
No 0

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