MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:263.0 nTPM
HPA Brain:666.4 nTPM
GTEx:263.0 nTPM
FANTOM5:385.0 Scaled Tags Per Million
Pig:142.1 nTPM
Mouse:69.7 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 666.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 534.1
2828 Female, age 72, unknown 778.1
2586 Male, age 75, left hemisphere 772.6
2219 Male, age 76, both hemispheres 627.4
2666 Male, age 74, left hemisphere 622.5
1827 Male, age 72, unknown 501.1
1833 Male, age 53, unknown 445.6
1870 Female, age 42, unknown 439.2
1830 Male, age 51, unknown 407.0
2019 Male, age 18, unknown 406.4
2411 Female, age 72, unknown 340.7
Dorsal raphe nucleus
nTPM: 526.8
2016 Female, age 72, unknown 681.6
1828 Male, age 53, unknown 594.1
2047 Male, age 72, unknown 515.7
2298 Female, age 72, unknown 448.1
2750 Male, age 76, both hemispheres 394.4
Inferior colliculus
nTPM: 467.1
2849 Male, age 72, unknown 568.9
1848 Female, age 42, unknown 477.8
1890 Male, age 53, unknown 460.3
2097 Female, age 72, unknown 361.3
Median raphe nucleus
nTPM: 399.5
2220 Male, age 76, midline 399.5
Periaquaductal grey, anterior
nTPM: 569.1
1795 Male, age 51, unknown 699.6
2502 Female, age 75, unknown 587.7
1947 Male, age 18, unknown 419.8
Periaquaductal grey, dorsal
nTPM: 638.4
2850 Male, age 76, both hemispheres 801.2
1831 Male, age 72, unknown 692.6
1840 Male, age 53, unknown 613.0
2464 Female, age 72, unknown 447.0
Periaquaductal grey, lateral
nTPM: 666.4
2053 Male, age 18, unknown 745.5
2140 Male, age 76, both hemispheres 740.5
2272 Male, age 74, both hemispheres 513.2
Pretectal area
nTPM: 577.7
2316 Male, age 76, right hemisphere 659.7
2407 Male, age 75, both hemispheres 651.8
2825 Male, age 18, unknown 616.8
2667 Female, age 75, unknown 615.6
1815 Male, age 53, unknown 588.3
1944 Female, age 72, unknown 580.8
1816 Male, age 51, unknown 567.3
2273 Male, age 74, both hemispheres 550.1
2224 Female, age 72, unknown 533.1
1817 Female, age 42, unknown 512.3
2007 Male, age 72, unknown 478.3
Red nucleus
nTPM: 494.6
2769 Male, age 72, unknown 545.0
2503 Female, age 72, unknown 544.0
2584 Male, age 75, left hemisphere 526.5
2823 Male, age 76, right hemisphere 520.5
2588 Male, age 74, left hemisphere 518.4
2227 Male, age 72, unknown 501.9
1904 Male, age 53, unknown 497.4
1865 Male, age 51, unknown 493.6
2785 Male, age 18, unknown 467.9
1954 Female, age 42, unknown 447.2
2725 Female, age 75, unknown 446.0
1821 Female, age 72, unknown 426.5
Substantia nigra
nTPM: 542.2
2699 Male, age 18, unknown 870.6
2665 Male, age 74, both hemispheres 703.4
2583 Male, age 75, right hemisphere 632.6
1916 Female, age 42, unknown 547.3
1851 Male, age 51, unknown 527.0
2590 Female, age 75, unknown 471.4
1889 Female, age 72, unknown 457.5
1941 Male, age 53, unknown 451.4
2409 Female, age 72, unknown 415.6
2241 Male, age 72, unknown 345.5
Superior colliculus
nTPM: 586.6
2664 Male, age 75, both hemispheres 851.8
1995 Male, age 72, unknown 698.1
2668 Female, age 75, unknown 623.0
1913 Female, age 42, unknown 620.8
1796 Male, age 53, unknown 581.7
2587 Male, age 74, left hemisphere 552.6
2087 Female, age 72, unknown 550.4
1839 Male, age 51, unknown 543.6
2261 Male, age 18, unknown 501.0
1895 Male, age 76, right hemisphere 343.2
Ventral tegmental area
nTPM: 516.9
2021 Male, age 53, unknown 585.1
1942 Male, age 51, unknown 549.8
1915 Female, age 42, unknown 532.3
2218 Male, age 76, both hemispheres 487.6
2223 Female, age 72, unknown 478.4
2410 Female, age 72, unknown 468.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 263.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 263.0
Samples: 139

Max nTPM: 481.4
Min nTPM: 69.3
Std nTPM: 89.4
Median nTPM: 252.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 481.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 475.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 471.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 469.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 434.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 424.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 423.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 415.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 414.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 414.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 406.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 385.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 385.0
FF:10158-103A5 76 years, female 385.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 142.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 142.1
Samples: 4

Max nTPM: 158.5
Min nTPM: 117.4
Sample A Female 135.9
Sample B Female 117.4
Sample C Male 158.5
Sample D Male 156.5
Midbrain
nTPM: 136.1
Samples: 4

Max nTPM: 144.1
Min nTPM: 123.8
Sample A Female 123.8
Sample B Female 137.9
Sample C Male 144.1
Sample D Male 138.4
Periaqueductal gray
nTPM: 140.1
Samples: 3

Max nTPM: 148.7
Min nTPM: 127.1
Sample B Female 144.5
Sample C Male 148.7
Sample D Male 127.1
Superior colliculi
nTPM: 127.8
Samples: 4

Max nTPM: 156.3
Min nTPM: 78.2
Sample A Female 138.2
Sample B Female 78.2
Sample C Male 138.3
Sample D Male 156.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 63.9
Sample A Male 81.0
Sample B Male 64.1
Sample C Female 63.9
Sample D Female 69.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
69816494 Antisense, RP_050510_01_C01, Mouse strain C57BL/6J (56 days, male) 7.1
77332715 Antisense, RP_070116_02_B11, Mouse strain C57BL/6J (56 days, male) 6.9

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