MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.2 nTPM
HPA Brain:10.1 nTPM
GTEx:6.2 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:4.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2666 Male, age 74, left hemisphere 11.3
2019 Male, age 18, unknown 11.0
2586 Male, age 75, left hemisphere 8.8
2828 Female, age 72, unknown 8.0
2411 Female, age 72, unknown 7.6
1870 Female, age 42, unknown 7.4
2219 Male, age 76, both hemispheres 7.2
1833 Male, age 53, unknown 7.0
1830 Male, age 51, unknown 6.9
1827 Male, age 72, unknown 5.9
Dorsal raphe nucleus
nTPM: 6.7
1828 Male, age 53, unknown 8.4
2750 Male, age 76, both hemispheres 7.0
2047 Male, age 72, unknown 6.6
2016 Female, age 72, unknown 5.8
2298 Female, age 72, unknown 5.7
Inferior colliculus
nTPM: 7.6
1890 Male, age 53, unknown 8.7
2097 Female, age 72, unknown 8.5
1848 Female, age 42, unknown 6.6
2849 Male, age 72, unknown 6.4
Median raphe nucleus
nTPM: 5.8
2220 Male, age 76, midline 5.8
Periaquaductal grey, anterior
nTPM: 7.4
2502 Female, age 75, unknown 8.7
1947 Male, age 18, unknown 7.3
1795 Male, age 51, unknown 6.2
Periaquaductal grey, dorsal
nTPM: 5.3
2464 Female, age 72, unknown 7.0
1831 Male, age 72, unknown 5.8
1840 Male, age 53, unknown 4.2
2850 Male, age 76, both hemispheres 4.1
Periaquaductal grey, lateral
nTPM: 5.4
2053 Male, age 18, unknown 6.1
2272 Male, age 74, both hemispheres 5.0
2140 Male, age 76, both hemispheres 4.9
Pretectal area
nTPM: 6.6
1817 Female, age 42, unknown 9.9
2007 Male, age 72, unknown 9.8
1944 Female, age 72, unknown 7.3
1816 Male, age 51, unknown 7.1
2667 Female, age 75, unknown 7.0
1815 Male, age 53, unknown 6.9
2316 Male, age 76, right hemisphere 6.7
2224 Female, age 72, unknown 5.4
2825 Male, age 18, unknown 4.8
2407 Male, age 75, both hemispheres 4.1
2273 Male, age 74, both hemispheres 3.5
Red nucleus
nTPM: 10.1
2588 Male, age 74, left hemisphere 14.1
1904 Male, age 53, unknown 11.8
2227 Male, age 72, unknown 11.7
2769 Male, age 72, unknown 11.7
1821 Female, age 72, unknown 10.6
2785 Male, age 18, unknown 10.0
2503 Female, age 72, unknown 9.7
1954 Female, age 42, unknown 9.5
2584 Male, age 75, left hemisphere 9.3
1865 Male, age 51, unknown 8.2
2823 Male, age 76, right hemisphere 8.0
2725 Female, age 75, unknown 7.0
Substantia nigra
nTPM: 7.4
2665 Male, age 74, both hemispheres 13.0
1851 Male, age 51, unknown 9.1
1916 Female, age 42, unknown 8.1
1889 Female, age 72, unknown 7.2
2583 Male, age 75, right hemisphere 7.2
1941 Male, age 53, unknown 6.7
2699 Male, age 18, unknown 6.6
2409 Female, age 72, unknown 5.8
2590 Female, age 75, unknown 5.6
2241 Male, age 72, unknown 5.1
Superior colliculus
nTPM: 6.5
2668 Female, age 75, unknown 9.0
2087 Female, age 72, unknown 7.8
2587 Male, age 74, left hemisphere 7.0
1839 Male, age 51, unknown 6.6
2664 Male, age 75, both hemispheres 6.5
1995 Male, age 72, unknown 5.9
2261 Male, age 18, unknown 5.7
1796 Male, age 53, unknown 5.6
1895 Male, age 76, right hemisphere 5.6
1913 Female, age 42, unknown 5.4
Ventral tegmental area
nTPM: 6.9
1942 Male, age 51, unknown 7.9
2223 Female, age 72, unknown 7.3
2218 Male, age 76, both hemispheres 6.8
2410 Female, age 72, unknown 6.8
1915 Female, age 42, unknown 6.4
2021 Male, age 53, unknown 6.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.2
Samples: 139

Max nTPM: 25.2
Min nTPM: 0.7
Std nTPM: 3.4
Median nTPM: 5.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 25.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 14.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 13.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 13.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 12.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 12.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 11.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 11.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 11.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 8.3
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 8.3
Sample C Male 5.7
Sample D Male 6.4
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 5.6
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 4.9
Min nTPM: 4.3
Sample B Female 4.9
Sample C Male 4.7
Sample D Male 4.3
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 11.1
Sample C Male 6.2
Sample D Male 6.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.4
Min nTPM: 4.1
Sample A Male 4.2
Sample B Male 4.4
Sample C Female 4.1
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
70429268 Antisense, RP_050614_01_D03, Mouse strain C57BL/6J (56 days, male) 0.6

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