MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.8 nTPM
HPA Brain:303.4 nTPM
GTEx:102.8 nTPM
FANTOM5:683.3 Scaled Tags Per Million
Pig:368.8 nTPM
Mouse:430.8 nTPM
Allen mouse:19.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 303.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 303.4
2586 Male, age 75, left hemisphere 361.3
2411 Female, age 72, unknown 322.2
2019 Male, age 18, unknown 321.2
1870 Female, age 42, unknown 310.2
2666 Male, age 74, left hemisphere 305.1
1827 Male, age 72, unknown 303.3
2828 Female, age 72, unknown 297.5
1833 Male, age 53, unknown 293.3
1830 Male, age 51, unknown 280.8
2219 Male, age 76, both hemispheres 238.7
Dorsal raphe nucleus
nTPM: 283.1
2750 Male, age 76, both hemispheres 321.2
2047 Male, age 72, unknown 286.9
2298 Female, age 72, unknown 284.8
1828 Male, age 53, unknown 276.2
2016 Female, age 72, unknown 246.3
Inferior colliculus
nTPM: 262.3
2097 Female, age 72, unknown 285.6
1848 Female, age 42, unknown 273.1
1890 Male, age 53, unknown 248.9
2849 Male, age 72, unknown 241.9
Median raphe nucleus
nTPM: 270.0
2220 Male, age 76, midline 270.0
Periaquaductal grey, anterior
nTPM: 291.4
2502 Female, age 75, unknown 304.3
1947 Male, age 18, unknown 300.6
1795 Male, age 51, unknown 269.3
Periaquaductal grey, dorsal
nTPM: 233.8
2464 Female, age 72, unknown 260.7
1840 Male, age 53, unknown 239.2
2850 Male, age 76, both hemispheres 218.6
1831 Male, age 72, unknown 216.6
Periaquaductal grey, lateral
nTPM: 217.3
2053 Male, age 18, unknown 243.3
2272 Male, age 74, both hemispheres 204.9
2140 Male, age 76, both hemispheres 203.6
Pretectal area
nTPM: 291.5
1817 Female, age 42, unknown 362.5
2007 Male, age 72, unknown 344.9
1816 Male, age 51, unknown 334.1
1815 Male, age 53, unknown 334.0
1944 Female, age 72, unknown 313.9
2407 Male, age 75, both hemispheres 272.8
2667 Female, age 75, unknown 265.9
2825 Male, age 18, unknown 249.9
2224 Female, age 72, unknown 249.4
2316 Male, age 76, right hemisphere 243.1
2273 Male, age 74, both hemispheres 236.1
Red nucleus
nTPM: 300.5
1821 Female, age 72, unknown 349.1
1865 Male, age 51, unknown 316.4
1954 Female, age 42, unknown 312.6
2785 Male, age 18, unknown 308.8
1904 Male, age 53, unknown 308.5
2584 Male, age 75, left hemisphere 298.1
2588 Male, age 74, left hemisphere 297.7
2769 Male, age 72, unknown 291.6
2503 Female, age 72, unknown 287.5
2227 Male, age 72, unknown 286.6
2823 Male, age 76, right hemisphere 284.9
2725 Female, age 75, unknown 264.7
Substantia nigra
nTPM: 286.8
1916 Female, age 42, unknown 322.6
1889 Female, age 72, unknown 316.4
1851 Male, age 51, unknown 310.5
2241 Male, age 72, unknown 309.1
2583 Male, age 75, right hemisphere 298.5
1941 Male, age 53, unknown 284.2
2409 Female, age 72, unknown 281.0
2590 Female, age 75, unknown 260.5
2665 Male, age 74, both hemispheres 244.6
2699 Male, age 18, unknown 241.1
Superior colliculus
nTPM: 290.7
2668 Female, age 75, unknown 372.0
2261 Male, age 18, unknown 310.4
2664 Male, age 75, both hemispheres 298.6
2087 Female, age 72, unknown 292.5
1796 Male, age 53, unknown 283.2
1995 Male, age 72, unknown 273.6
1895 Male, age 76, right hemisphere 272.6
1913 Female, age 42, unknown 271.9
1839 Male, age 51, unknown 268.1
2587 Male, age 74, left hemisphere 263.8
Ventral tegmental area
nTPM: 272.8
2410 Female, age 72, unknown 318.7
1915 Female, age 42, unknown 275.3
2223 Female, age 72, unknown 273.2
2218 Male, age 76, both hemispheres 261.6
1942 Male, age 51, unknown 256.2
2021 Male, age 53, unknown 252.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.8
Samples: 139

Max nTPM: 200.4
Min nTPM: 41.9
Std nTPM: 32.2
Median nTPM: 96.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 200.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 197.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 182.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 172.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 167.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 164.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 164.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 162.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 154.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 151.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 151.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 683.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 683.3
FF:10158-103A5 76 years, female 683.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 368.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 349.2
Samples: 4

Max nTPM: 436.3
Min nTPM: 226.2
Sample A Female 436.3
Sample B Female 226.2
Sample C Male 399.1
Sample D Male 335.1
Midbrain
nTPM: 368.9
Samples: 4

Max nTPM: 444.3
Min nTPM: 287.7
Sample A Female 444.3
Sample B Female 319.4
Sample C Male 424.0
Sample D Male 287.7
Periaqueductal gray
nTPM: 263.9
Samples: 3

Max nTPM: 279.4
Min nTPM: 235.2
Sample B Female 279.4
Sample C Male 277.2
Sample D Male 235.2
Superior colliculi
nTPM: 307.9
Samples: 4

Max nTPM: 383.7
Min nTPM: 152.8
Sample A Female 354.5
Sample B Female 152.8
Sample C Male 383.7
Sample D Male 340.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 430.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 430.8
Samples: 4

Max nTPM: 469.6
Min nTPM: 380.2
Sample A Male 380.2
Sample B Male 426.6
Sample C Female 469.6
Sample D Female 446.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.1
2649 Antisense, RP_Baylor_103378, Mouse strain C57BL/6J (56 days, male) 19.1
2650 Antisense, RP_Baylor_103378, Mouse strain C57BL/6J (56 days, male) 16.8

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