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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1047.0
nTPM
GTEx:
1047.0
nTPM
FANTOM5:
567.0
Scaled Tags Per Million
Pig:
401.4
nTPM
Mouse:
1228.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA016970
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA074677
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1047.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1047.0
Samples: 105
Max nTPM: 1989.6
Min nTPM: 430.1
Std nTPM: 304.4
Median nTPM:
316_1
62 years, male
1989.6
217_1
76 years, male
1817.4
480_1
63 years, male
1648.8
375_1
74 years, female
1636.6
405_1
91 years, male
1600.5
43_1
64 years, female
1501.2
466_1
57 years, female
1498.6
229_1
69 years, female
1461.9
386_1
76 years, male
1454.2
352_1
62 years, male
1454.0
526_1
61 years, male
1412.9
286_1
68 years, female
1405.6
319_1
81 years, male
1397.2
142_1
61 years, female
1386.6
499_1
55 years, female
1378.3
318_1
68 years, male
1366.9
447_1
81 years, male
1358.2
35_1
74 years, female
1354.7
6_1
73 years, female
1348.1
415_1
77 years, female
1334.8
324_1
76 years, male
1311.3
396_1
62 years, male
1301.9
218_1
71 years, female
1293.8
322_1
76 years, male
1284.0
355_1
70 years, female
1280.2
237_1
82 years, male
1276.2
389_1
86 years, female
1272.3
518_1
75 years, female
1272.0
404_1
82 years, female
1265.5
376_1
75 years, female
1254.5
246_1
77 years, male
1254.1
320_1
89 years, female
1238.1
172_1
72 years, female
1222.0
81_1
67 years, male
1195.2
153_1
70 years, female
1189.3
379_1
60 years, male
1173.5
348_1
84 years, male
1170.9
265_1
87 years, male
1163.2
354_1
81 years, female
1157.3
347_1
72 years, male
1153.8
468_1
89 years, male
1152.3
32_1
67 years, male
1147.0
425_1
59 years, female
1140.5
149_1
88 years, male
1135.9
291_1
76 years, male
1118.4
126_1
63 years, male
1096.3
266_1
85 years, male
1087.6
377_1
82 years, female
1077.8
292_1
71 years, male
1058.9
251_1
78 years, male
1040.9
321_1
62 years, female
1039.7
243_1
75 years, male
1038.0
406_1
79 years, male
1032.6
394_1
75 years, female
1028.2
503_1
68 years, male
1008.0
350_1
84 years, female
1006.9
9_1
66 years, female
998.2
384_1
83 years, male
980.4
145_1
84 years, male
978.0
490_1
67 years, female
967.1
335_1
73 years, female
952.6
353_1
82 years, female
948.6
162_1
79 years, female
945.3
163_1
78 years, male
939.4
517_1
88 years, male
938.0
139_1
64 years, female
917.5
356_1
87 years, female
901.3
18_1
88 years, male
901.2
115_1
83 years, male
893.8
177_1
74 years, male
887.9
307_1
66 years, female
876.4
288_1
66 years, female
853.8
117_1
61 years, male
852.7
413_1
59 years, female
852.6
17_1
71 years, male
824.8
313_1
79 years, female
822.3
349_1
83 years, male
819.9
414_1
84 years, female
812.5
4_1
88 years, female
800.4
495_1
57 years, female
782.5
173_1
67 years, male
782.4
311_1
78 years, male
779.0
254_1
77 years, female
761.0
506_1
65 years, male
754.1
120_1
70 years, female
753.8
315_1
62 years, female
739.8
2_1
77 years, female
736.8
295_1
61 years, female
732.7
264_1
73 years, female
729.8
189_1
76 years, male
714.2
314_1
67 years, male
704.5
109_1
81 years, female
703.2
317_1
60 years, male
687.8
42_1
85 years, male
685.1
501_1
88 years, male
670.5
308_1
70 years, female
668.9
119_1
70 years, female
651.8
99_1
64 years, male
627.7
293_1
68 years, female
624.8
137_1
83 years, male
624.4
491_1
89 years, female
600.1
89_1
63 years, male
597.8
351_1
91 years, male
521.9
41_1
94 years, female
462.2
452_1
88 years, female
430.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.