MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:151.5 nTPM
HPA Brain:284.7 nTPM
GTEx:151.5 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:67.1 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 284.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 284.7
2586 Male, age 75, left hemisphere 352.9
2666 Male, age 74, left hemisphere 350.9
2019 Male, age 18, unknown 310.7
1827 Male, age 72, unknown 284.9
2828 Female, age 72, unknown 280.8
1830 Male, age 51, unknown 278.7
2411 Female, age 72, unknown 269.4
1833 Male, age 53, unknown 251.4
1870 Female, age 42, unknown 233.9
2219 Male, age 76, both hemispheres 233.4
Dorsal raphe nucleus
nTPM: 231.7
2016 Female, age 72, unknown 253.4
1828 Male, age 53, unknown 238.1
2047 Male, age 72, unknown 231.2
2298 Female, age 72, unknown 219.3
2750 Male, age 76, both hemispheres 216.4
Inferior colliculus
nTPM: 242.5
2849 Male, age 72, unknown 249.6
1890 Male, age 53, unknown 247.7
1848 Female, age 42, unknown 237.8
2097 Female, age 72, unknown 235.0
Median raphe nucleus
nTPM: 219.3
2220 Male, age 76, midline 219.3
Periaquaductal grey, anterior
nTPM: 264.6
1795 Male, age 51, unknown 272.0
1947 Male, age 18, unknown 262.0
2502 Female, age 75, unknown 259.8
Periaquaductal grey, dorsal
nTPM: 243.9
2464 Female, age 72, unknown 255.8
1831 Male, age 72, unknown 248.1
1840 Male, age 53, unknown 236.1
2850 Male, age 76, both hemispheres 235.5
Periaquaductal grey, lateral
nTPM: 234.7
2053 Male, age 18, unknown 250.1
2140 Male, age 76, both hemispheres 229.6
2272 Male, age 74, both hemispheres 224.4
Pretectal area
nTPM: 277.8
2007 Male, age 72, unknown 356.4
1944 Female, age 72, unknown 325.0
1815 Male, age 53, unknown 324.6
1816 Male, age 51, unknown 320.3
2407 Male, age 75, both hemispheres 300.8
1817 Female, age 42, unknown 296.5
2316 Male, age 76, right hemisphere 241.1
2667 Female, age 75, unknown 228.1
2224 Female, age 72, unknown 224.2
2825 Male, age 18, unknown 221.1
2273 Male, age 74, both hemispheres 217.6
Red nucleus
nTPM: 276.4
2588 Male, age 74, left hemisphere 345.6
2584 Male, age 75, left hemisphere 328.1
2785 Male, age 18, unknown 328.1
2823 Male, age 76, right hemisphere 284.1
1865 Male, age 51, unknown 280.3
2725 Female, age 75, unknown 267.0
2503 Female, age 72, unknown 257.0
2769 Male, age 72, unknown 250.2
1954 Female, age 42, unknown 248.9
2227 Male, age 72, unknown 244.9
1904 Male, age 53, unknown 243.0
1821 Female, age 72, unknown 239.8
Substantia nigra
nTPM: 268.3
2665 Male, age 74, both hemispheres 303.0
2583 Male, age 75, right hemisphere 299.3
2590 Female, age 75, unknown 296.3
1941 Male, age 53, unknown 287.9
1889 Female, age 72, unknown 279.6
2409 Female, age 72, unknown 262.3
1851 Male, age 51, unknown 249.5
2241 Male, age 72, unknown 239.6
1916 Female, age 42, unknown 238.6
2699 Male, age 18, unknown 226.4
Superior colliculus
nTPM: 279.9
2668 Female, age 75, unknown 314.9
2664 Male, age 75, both hemispheres 304.1
2087 Female, age 72, unknown 300.6
2261 Male, age 18, unknown 291.9
1913 Female, age 42, unknown 280.3
1995 Male, age 72, unknown 276.3
1796 Male, age 53, unknown 271.2
2587 Male, age 74, left hemisphere 259.7
1839 Male, age 51, unknown 251.1
1895 Male, age 76, right hemisphere 248.8
Ventral tegmental area
nTPM: 239.3
2410 Female, age 72, unknown 290.3
2021 Male, age 53, unknown 237.6
1942 Male, age 51, unknown 232.6
2218 Male, age 76, both hemispheres 232.5
2223 Female, age 72, unknown 226.0
1915 Female, age 42, unknown 216.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.5
Samples: 139

Max nTPM: 259.0
Min nTPM: 74.6
Std nTPM: 36.2
Median nTPM: 142.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 259.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 249.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 243.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 241.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 235.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 233.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 227.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 214.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 214.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 214.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 212.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.5
FF:10158-103A5 76 years, female 86.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.9
Samples: 4

Max nTPM: 57.0
Min nTPM: 47.4
Sample A Female 50.6
Sample B Female 52.5
Sample C Male 57.0
Sample D Male 47.4
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 78.4
Min nTPM: 40.7
Sample A Female 43.7
Sample B Female 40.7
Sample C Male 78.4
Sample D Male 67.1
Periaqueductal gray
nTPM: 44.6
Samples: 3

Max nTPM: 52.8
Min nTPM: 39.5
Sample B Female 41.4
Sample C Male 52.8
Sample D Male 39.5
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 67.5
Min nTPM: 53.8
Sample A Female 53.8
Sample B Female 56.6
Sample C Male 62.3
Sample D Male 67.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.1
Samples: 4

Max nTPM: 69.9
Min nTPM: 64.0
Sample A Male 64.0
Sample B Male 65.4
Sample C Female 69.9
Sample D Female 68.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68844235 Antisense, RP_050222_01_B09, Mouse strain C57BL/6J (56 days, male) 4.5

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