MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.6 nTPM
HPA Brain:144.0 nTPM
GTEx:4.6 nTPM
FANTOM5:9.0 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:3.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 144.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.7
2411 Female, age 72, unknown 150.4
1827 Male, age 72, unknown 145.0
2219 Male, age 76, both hemispheres 142.5
2019 Male, age 18, unknown 135.6
1830 Male, age 51, unknown 132.8
1833 Male, age 53, unknown 132.8
2828 Female, age 72, unknown 112.3
2586 Male, age 75, left hemisphere 109.3
2666 Male, age 74, left hemisphere 108.5
1870 Female, age 42, unknown 98.3
Dorsal raphe nucleus
nTPM: 125.4
2047 Male, age 72, unknown 146.7
2016 Female, age 72, unknown 145.9
2750 Male, age 76, both hemispheres 119.8
1828 Male, age 53, unknown 107.6
2298 Female, age 72, unknown 107.3
Inferior colliculus
nTPM: 131.5
1848 Female, age 42, unknown 138.6
1890 Male, age 53, unknown 131.4
2849 Male, age 72, unknown 131.4
2097 Female, age 72, unknown 124.5
Median raphe nucleus
nTPM: 110.6
2220 Male, age 76, midline 110.6
Periaquaductal grey, anterior
nTPM: 128.3
1947 Male, age 18, unknown 161.0
1795 Male, age 51, unknown 116.7
2502 Female, age 75, unknown 107.3
Periaquaductal grey, dorsal
nTPM: 138.8
1831 Male, age 72, unknown 156.2
1840 Male, age 53, unknown 140.3
2464 Female, age 72, unknown 138.5
2850 Male, age 76, both hemispheres 120.4
Periaquaductal grey, lateral
nTPM: 144.0
2272 Male, age 74, both hemispheres 153.8
2053 Male, age 18, unknown 141.0
2140 Male, age 76, both hemispheres 137.2
Pretectal area
nTPM: 125.8
2273 Male, age 74, both hemispheres 152.9
1944 Female, age 72, unknown 146.5
2667 Female, age 75, unknown 137.4
2407 Male, age 75, both hemispheres 135.4
2825 Male, age 18, unknown 126.5
2316 Male, age 76, right hemisphere 125.0
1816 Male, age 51, unknown 121.5
2007 Male, age 72, unknown 120.3
2224 Female, age 72, unknown 115.8
1815 Male, age 53, unknown 111.5
1817 Female, age 42, unknown 90.3
Red nucleus
nTPM: 120.6
1954 Female, age 42, unknown 133.2
2588 Male, age 74, left hemisphere 132.7
1904 Male, age 53, unknown 130.1
1865 Male, age 51, unknown 127.5
2584 Male, age 75, left hemisphere 127.0
2823 Male, age 76, right hemisphere 124.7
2503 Female, age 72, unknown 122.5
2725 Female, age 75, unknown 122.5
1821 Female, age 72, unknown 108.9
2769 Male, age 72, unknown 107.3
2227 Male, age 72, unknown 107.0
2785 Male, age 18, unknown 104.2
Substantia nigra
nTPM: 128.7
2409 Female, age 72, unknown 190.9
1941 Male, age 53, unknown 151.0
2590 Female, age 75, unknown 142.1
2583 Male, age 75, right hemisphere 132.5
1851 Male, age 51, unknown 121.3
1889 Female, age 72, unknown 118.8
1916 Female, age 42, unknown 118.2
2665 Male, age 74, both hemispheres 107.4
2699 Male, age 18, unknown 105.1
2241 Male, age 72, unknown 100.1
Superior colliculus
nTPM: 124.6
1895 Male, age 76, right hemisphere 149.9
1995 Male, age 72, unknown 132.5
1913 Female, age 42, unknown 132.3
2087 Female, age 72, unknown 129.7
2261 Male, age 18, unknown 125.7
1839 Male, age 51, unknown 117.8
2587 Male, age 74, left hemisphere 117.4
2664 Male, age 75, both hemispheres 116.7
2668 Female, age 75, unknown 115.7
1796 Male, age 53, unknown 108.4
Ventral tegmental area
nTPM: 126.4
2410 Female, age 72, unknown 154.8
1942 Male, age 51, unknown 136.3
2021 Male, age 53, unknown 133.4
1915 Female, age 42, unknown 116.1
2218 Male, age 76, both hemispheres 109.6
2223 Female, age 72, unknown 108.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.6
Samples: 139

Max nTPM: 11.0
Min nTPM: 1.7
Std nTPM: 1.4
Median nTPM: 4.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 11.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 10.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 8.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 8.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 7.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 7.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.0
FF:10158-103A5 76 years, female 9.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.6
Sample A Female 2.8
Sample B Female 4.7
Sample C Male 2.6
Sample D Male 5.2
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.1
Sample A Female 3.7
Sample B Female 3.5
Sample C Male 2.1
Sample D Male 2.8
Periaqueductal gray
nTPM: 3.5
Samples: 3

Max nTPM: 3.8
Min nTPM: 3.1
Sample B Female 3.6
Sample C Male 3.1
Sample D Male 3.8
Superior colliculi
nTPM: 3.3
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.2
Sample A Female 3.0
Sample B Female 4.9
Sample C Male 2.2
Sample D Male 3.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 2.9
Sample C Female 3.5
Sample D Female 3.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72004483 Antisense, RP_050915_03_A05, Mouse strain C57BL/6J (56 days, male) 0.0

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