MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.8 nTPM
HPA Brain:53.4 nTPM
GTEx:40.8 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:43.4 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.9
2586 Male, age 75, left hemisphere 60.3
2019 Male, age 18, unknown 54.5
1827 Male, age 72, unknown 47.8
2828 Female, age 72, unknown 44.1
2411 Female, age 72, unknown 42.1
2666 Male, age 74, left hemisphere 40.5
1870 Female, age 42, unknown 35.7
1833 Male, age 53, unknown 34.9
2219 Male, age 76, both hemispheres 34.5
1830 Male, age 51, unknown 34.4
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 61.9
1828 Male, age 53, unknown 49.9
2047 Male, age 72, unknown 46.9
2016 Female, age 72, unknown 45.3
2750 Male, age 76, both hemispheres 39.4
Inferior colliculus
nTPM: 38.2
2097 Female, age 72, unknown 45.3
1890 Male, age 53, unknown 39.3
2849 Male, age 72, unknown 34.5
1848 Female, age 42, unknown 33.7
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Periaquaductal grey, anterior
nTPM: 51.0
1795 Male, age 51, unknown 58.9
2502 Female, age 75, unknown 48.6
1947 Male, age 18, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 40.8
2850 Male, age 76, both hemispheres 48.6
1840 Male, age 53, unknown 41.6
1831 Male, age 72, unknown 36.9
2464 Female, age 72, unknown 36.0
Periaquaductal grey, lateral
nTPM: 53.4
2272 Male, age 74, both hemispheres 76.8
2140 Male, age 76, both hemispheres 46.2
2053 Male, age 18, unknown 37.0
Pretectal area
nTPM: 46.6
2273 Male, age 74, both hemispheres 59.8
2007 Male, age 72, unknown 58.1
1816 Male, age 51, unknown 52.3
1817 Female, age 42, unknown 51.4
1944 Female, age 72, unknown 48.0
2224 Female, age 72, unknown 45.7
2667 Female, age 75, unknown 45.6
1815 Male, age 53, unknown 44.0
2407 Male, age 75, both hemispheres 40.2
2825 Male, age 18, unknown 37.8
2316 Male, age 76, right hemisphere 29.7
Red nucleus
nTPM: 39.5
2785 Male, age 18, unknown 55.3
2769 Male, age 72, unknown 41.7
2725 Female, age 75, unknown 41.6
2584 Male, age 75, left hemisphere 41.1
2588 Male, age 74, left hemisphere 39.6
2227 Male, age 72, unknown 38.5
1904 Male, age 53, unknown 37.1
1954 Female, age 42, unknown 36.6
2503 Female, age 72, unknown 36.5
1821 Female, age 72, unknown 36.3
1865 Male, age 51, unknown 35.6
2823 Male, age 76, right hemisphere 34.3
Substantia nigra
nTPM: 40.4
1916 Female, age 42, unknown 50.7
1889 Female, age 72, unknown 44.9
2583 Male, age 75, right hemisphere 44.8
1851 Male, age 51, unknown 44.0
1941 Male, age 53, unknown 43.4
2665 Male, age 74, both hemispheres 37.4
2590 Female, age 75, unknown 37.3
2409 Female, age 72, unknown 34.6
2699 Male, age 18, unknown 34.0
2241 Male, age 72, unknown 33.3
Superior colliculus
nTPM: 41.9
1796 Male, age 53, unknown 50.1
2261 Male, age 18, unknown 49.6
2087 Female, age 72, unknown 45.1
2664 Male, age 75, both hemispheres 44.9
2668 Female, age 75, unknown 44.0
1995 Male, age 72, unknown 41.0
2587 Male, age 74, left hemisphere 40.2
1839 Male, age 51, unknown 37.0
1913 Female, age 42, unknown 35.5
1895 Male, age 76, right hemisphere 31.2
Ventral tegmental area
nTPM: 40.6
1915 Female, age 42, unknown 45.6
2410 Female, age 72, unknown 43.1
1942 Male, age 51, unknown 41.9
2218 Male, age 76, both hemispheres 39.1
2021 Male, age 53, unknown 37.1
2223 Female, age 72, unknown 37.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.8
Samples: 139

Max nTPM: 66.0
Min nTPM: 20.4
Std nTPM: 9.3
Median nTPM: 40.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 66.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 64.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 63.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 58.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 58.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 57.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 57.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.6
FF:10158-103A5 76 years, female 23.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 37.2
Min nTPM: 22.2
Sample A Female 37.2
Sample B Female 22.2
Sample C Male 31.3
Sample D Male 22.5
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 41.3
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 27.2
Sample C Male 41.3
Sample D Male 33.2
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 29.5
Min nTPM: 22.7
Sample B Female 26.7
Sample C Male 29.5
Sample D Male 22.7
Superior colliculi
nTPM: 35.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 26.8
Sample A Female 38.2
Sample B Female 26.8
Sample C Male 45.6
Sample D Male 32.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 53.3
Min nTPM: 34.4
Sample A Male 53.3
Sample B Male 40.7
Sample C Female 34.4
Sample D Female 45.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
75774674 Antisense, RP_060530_01_C11, Mouse strain C57BL/6J (56 days, male) 6.4
564782 Antisense, RP_040826_01_F09, Mouse strain C57BL/6J (56 days, male) 5.5

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