MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:30.2 nTPM
GTEx:35.6 nTPM
FANTOM5:33.8 Scaled Tags Per Million
Pig:21.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
1870 Female, age 42, unknown 27.1
2219 Male, age 76, both hemispheres 27.1
2411 Female, age 72, unknown 23.4
1827 Male, age 72, unknown 23.2
2586 Male, age 75, left hemisphere 22.1
1833 Male, age 53, unknown 22.0
1830 Male, age 51, unknown 21.6
2828 Female, age 72, unknown 20.5
2019 Male, age 18, unknown 18.8
2666 Male, age 74, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 27.9
2047 Male, age 72, unknown 32.4
2298 Female, age 72, unknown 31.6
2750 Male, age 76, both hemispheres 27.6
1828 Male, age 53, unknown 26.0
2016 Female, age 72, unknown 21.9
Inferior colliculus
nTPM: 19.8
2097 Female, age 72, unknown 23.0
1890 Male, age 53, unknown 20.1
1848 Female, age 42, unknown 19.3
2849 Male, age 72, unknown 16.8
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Periaquaductal grey, anterior
nTPM: 22.4
1947 Male, age 18, unknown 25.0
1795 Male, age 51, unknown 21.6
2502 Female, age 75, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 19.4
1840 Male, age 53, unknown 21.7
2850 Male, age 76, both hemispheres 20.5
1831 Male, age 72, unknown 18.4
2464 Female, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 18.1
2272 Male, age 74, both hemispheres 20.8
2053 Male, age 18, unknown 18.2
2140 Male, age 76, both hemispheres 15.2
Pretectal area
nTPM: 22.9
2007 Male, age 72, unknown 26.3
2224 Female, age 72, unknown 25.5
1816 Male, age 51, unknown 24.2
1944 Female, age 72, unknown 24.1
2667 Female, age 75, unknown 23.6
2273 Male, age 74, both hemispheres 23.4
2825 Male, age 18, unknown 23.1
1815 Male, age 53, unknown 21.7
1817 Female, age 42, unknown 21.6
2407 Male, age 75, both hemispheres 21.3
2316 Male, age 76, right hemisphere 16.4
Red nucleus
nTPM: 19.3
1821 Female, age 72, unknown 23.5
2725 Female, age 75, unknown 22.2
2584 Male, age 75, left hemisphere 20.6
2503 Female, age 72, unknown 19.7
1954 Female, age 42, unknown 19.5
1865 Male, age 51, unknown 19.4
1904 Male, age 53, unknown 19.2
2785 Male, age 18, unknown 19.2
2227 Male, age 72, unknown 17.9
2769 Male, age 72, unknown 17.4
2588 Male, age 74, left hemisphere 17.2
2823 Male, age 76, right hemisphere 16.4
Substantia nigra
nTPM: 30.2
1916 Female, age 42, unknown 46.6
2241 Male, age 72, unknown 36.0
1851 Male, age 51, unknown 35.2
2409 Female, age 72, unknown 30.9
1941 Male, age 53, unknown 30.2
2699 Male, age 18, unknown 28.8
1889 Female, age 72, unknown 27.8
2665 Male, age 74, both hemispheres 24.5
2583 Male, age 75, right hemisphere 22.4
2590 Female, age 75, unknown 19.6
Superior colliculus
nTPM: 20.7
2668 Female, age 75, unknown 27.9
1913 Female, age 42, unknown 21.6
1796 Male, age 53, unknown 21.5
2261 Male, age 18, unknown 21.4
2587 Male, age 74, left hemisphere 21.4
2087 Female, age 72, unknown 20.8
1895 Male, age 76, right hemisphere 18.9
1839 Male, age 51, unknown 18.3
2664 Male, age 75, both hemispheres 18.2
1995 Male, age 72, unknown 17.1
Ventral tegmental area
nTPM: 28.4
1915 Female, age 42, unknown 32.8
2223 Female, age 72, unknown 31.0
2410 Female, age 72, unknown 28.7
2218 Male, age 76, both hemispheres 26.1
1942 Male, age 51, unknown 26.0
2021 Male, age 53, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.6
Samples: 139

Max nTPM: 67.1
Min nTPM: 17.2
Std nTPM: 9.2
Median nTPM: 33.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 60.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 60.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 57.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 54.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 51.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 51.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.8
FF:10158-103A5 76 years, female 33.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.2
Sample A Female 20.2
Sample B Female 20.9
Sample C Male 22.9
Sample D Male 20.7
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.1
Sample A Female 22.8
Sample B Female 21.4
Sample C Male 16.1
Sample D Male 17.9
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.4
Min nTPM: 14.7
Sample B Female 15.0
Sample C Male 15.4
Sample D Male 14.7
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 25.6
Sample C Male 17.9
Sample D Male 18.8

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