MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.0 nTPM
HPA Brain:154.1 nTPM
GTEx:104.0 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:23.7 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 154.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 140.3
2666 Male, age 74, left hemisphere 192.3
2586 Male, age 75, left hemisphere 183.9
2828 Female, age 72, unknown 145.4
1827 Male, age 72, unknown 143.5
2019 Male, age 18, unknown 133.4
2411 Female, age 72, unknown 127.0
2219 Male, age 76, both hemispheres 125.2
1870 Female, age 42, unknown 119.8
1833 Male, age 53, unknown 118.1
1830 Male, age 51, unknown 114.1
Dorsal raphe nucleus
nTPM: 115.3
2750 Male, age 76, both hemispheres 127.0
2047 Male, age 72, unknown 119.2
2298 Female, age 72, unknown 118.9
1828 Male, age 53, unknown 112.5
2016 Female, age 72, unknown 98.9
Inferior colliculus
nTPM: 129.6
2849 Male, age 72, unknown 143.9
2097 Female, age 72, unknown 134.8
1848 Female, age 42, unknown 121.4
1890 Male, age 53, unknown 118.3
Median raphe nucleus
nTPM: 129.6
2220 Male, age 76, midline 129.6
Periaquaductal grey, anterior
nTPM: 154.1
2502 Female, age 75, unknown 161.3
1795 Male, age 51, unknown 156.8
1947 Male, age 18, unknown 144.2
Periaquaductal grey, dorsal
nTPM: 114.2
1840 Male, age 53, unknown 134.3
2464 Female, age 72, unknown 122.8
1831 Male, age 72, unknown 103.7
2850 Male, age 76, both hemispheres 95.9
Periaquaductal grey, lateral
nTPM: 99.6
2053 Male, age 18, unknown 108.4
2140 Male, age 76, both hemispheres 102.0
2272 Male, age 74, both hemispheres 88.3
Pretectal area
nTPM: 141.1
1816 Male, age 51, unknown 196.9
2007 Male, age 72, unknown 180.7
1817 Female, age 42, unknown 175.3
1944 Female, age 72, unknown 166.8
1815 Male, age 53, unknown 142.8
2825 Male, age 18, unknown 130.1
2667 Female, age 75, unknown 126.6
2224 Female, age 72, unknown 124.0
2316 Male, age 76, right hemisphere 117.2
2407 Male, age 75, both hemispheres 113.6
2273 Male, age 74, both hemispheres 78.3
Red nucleus
nTPM: 114.5
2584 Male, age 75, left hemisphere 164.7
2785 Male, age 18, unknown 144.7
2588 Male, age 74, left hemisphere 141.1
2227 Male, age 72, unknown 117.4
2769 Male, age 72, unknown 116.1
2503 Female, age 72, unknown 109.8
2823 Male, age 76, right hemisphere 103.0
1954 Female, age 42, unknown 101.6
2725 Female, age 75, unknown 95.3
1904 Male, age 53, unknown 95.0
1821 Female, age 72, unknown 92.7
1865 Male, age 51, unknown 92.7
Substantia nigra
nTPM: 126.7
2665 Male, age 74, both hemispheres 163.0
1941 Male, age 53, unknown 152.7
1889 Female, age 72, unknown 152.6
1916 Female, age 42, unknown 144.9
1851 Male, age 51, unknown 130.3
2583 Male, age 75, right hemisphere 129.6
2590 Female, age 75, unknown 101.8
2699 Male, age 18, unknown 101.8
2241 Male, age 72, unknown 100.1
2409 Female, age 72, unknown 90.0
Superior colliculus
nTPM: 140.0
2668 Female, age 75, unknown 204.5
2087 Female, age 72, unknown 154.7
2664 Male, age 75, both hemispheres 154.1
1796 Male, age 53, unknown 144.4
2261 Male, age 18, unknown 139.1
1839 Male, age 51, unknown 132.3
1895 Male, age 76, right hemisphere 126.1
2587 Male, age 74, left hemisphere 118.8
1913 Female, age 42, unknown 116.9
1995 Male, age 72, unknown 109.2
Ventral tegmental area
nTPM: 122.3
2223 Female, age 72, unknown 128.9
1915 Female, age 42, unknown 125.3
1942 Male, age 51, unknown 121.6
2218 Male, age 76, both hemispheres 120.7
2410 Female, age 72, unknown 118.6
2021 Male, age 53, unknown 118.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.0
Samples: 139

Max nTPM: 212.6
Min nTPM: 48.4
Std nTPM: 30.1
Median nTPM: 103.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 212.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 166.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 163.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 162.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 162.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 157.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 156.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 153.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 152.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 151.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 145.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.9
Samples: 4

Max nTPM: 75.9
Min nTPM: 42.7
Sample A Female 70.6
Sample B Female 46.2
Sample C Male 75.9
Sample D Male 42.7
Midbrain
nTPM: 79.6
Samples: 4

Max nTPM: 109.7
Min nTPM: 49.7
Sample A Female 49.7
Sample B Female 61.7
Sample C Male 109.7
Sample D Male 97.1
Periaqueductal gray
nTPM: 63.4
Samples: 3

Max nTPM: 73.0
Min nTPM: 55.7
Sample B Female 61.6
Sample C Male 73.0
Sample D Male 55.7
Superior colliculi
nTPM: 83.4
Samples: 4

Max nTPM: 103.1
Min nTPM: 53.6
Sample A Female 84.3
Sample B Female 53.6
Sample C Male 103.1
Sample D Male 92.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 28.7
Min nTPM: 20.6
Sample A Male 28.7
Sample B Male 22.1
Sample C Female 20.6
Sample D Female 23.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
2089 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 3.1
2090 Antisense, RP_Baylor_103357, Mouse strain C57BL/6J (56 days, male) 1.3

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