MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA Brain:56.7 nTPM
GTEx:41.8 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:28.0 nTPM
Mouse:93.2 nTPM
Allen mouse:8.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.5
2219 Male, age 76, both hemispheres 56.5
1827 Male, age 72, unknown 51.7
2411 Female, age 72, unknown 49.1
2828 Female, age 72, unknown 47.5
2586 Male, age 75, left hemisphere 46.9
2666 Male, age 74, left hemisphere 43.8
1870 Female, age 42, unknown 40.4
1833 Male, age 53, unknown 39.9
1830 Male, age 51, unknown 38.9
2019 Male, age 18, unknown 30.4
Dorsal raphe nucleus
nTPM: 48.0
2298 Female, age 72, unknown 65.6
2047 Male, age 72, unknown 53.4
2750 Male, age 76, both hemispheres 52.9
1828 Male, age 53, unknown 36.8
2016 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 39.9
2097 Female, age 72, unknown 49.4
2849 Male, age 72, unknown 38.7
1848 Female, age 42, unknown 38.6
1890 Male, age 53, unknown 33.1
Median raphe nucleus
nTPM: 56.7
2220 Male, age 76, midline 56.7
Periaquaductal grey, anterior
nTPM: 54.7
2502 Female, age 75, unknown 60.0
1947 Male, age 18, unknown 52.0
1795 Male, age 51, unknown 51.9
Periaquaductal grey, dorsal
nTPM: 39.2
1840 Male, age 53, unknown 45.9
1831 Male, age 72, unknown 40.8
2850 Male, age 76, both hemispheres 35.0
2464 Female, age 72, unknown 34.9
Periaquaductal grey, lateral
nTPM: 35.1
2053 Male, age 18, unknown 44.8
2140 Male, age 76, both hemispheres 30.7
2272 Male, age 74, both hemispheres 29.8
Pretectal area
nTPM: 49.2
2667 Female, age 75, unknown 61.6
1816 Male, age 51, unknown 59.6
1944 Female, age 72, unknown 59.1
2224 Female, age 72, unknown 55.8
1815 Male, age 53, unknown 53.6
1817 Female, age 42, unknown 52.5
2007 Male, age 72, unknown 52.5
2825 Male, age 18, unknown 48.4
2316 Male, age 76, right hemisphere 38.0
2407 Male, age 75, both hemispheres 34.0
2273 Male, age 74, both hemispheres 26.1
Red nucleus
nTPM: 34.2
2584 Male, age 75, left hemisphere 53.9
2588 Male, age 74, left hemisphere 41.6
2785 Male, age 18, unknown 33.1
2769 Male, age 72, unknown 32.7
2227 Male, age 72, unknown 32.6
1904 Male, age 53, unknown 32.5
2503 Female, age 72, unknown 31.8
2725 Female, age 75, unknown 31.7
1865 Male, age 51, unknown 31.5
1821 Female, age 72, unknown 30.5
1954 Female, age 42, unknown 29.5
2823 Male, age 76, right hemisphere 29.4
Substantia nigra
nTPM: 54.4
1916 Female, age 42, unknown 76.2
2665 Male, age 74, both hemispheres 66.9
1851 Male, age 51, unknown 60.8
1941 Male, age 53, unknown 54.1
1889 Female, age 72, unknown 53.0
2409 Female, age 72, unknown 51.0
2699 Male, age 18, unknown 50.3
2241 Male, age 72, unknown 50.0
2583 Male, age 75, right hemisphere 42.2
2590 Female, age 75, unknown 39.2
Superior colliculus
nTPM: 44.1
1796 Male, age 53, unknown 59.4
2261 Male, age 18, unknown 53.8
2087 Female, age 72, unknown 52.5
2668 Female, age 75, unknown 44.3
2587 Male, age 74, left hemisphere 41.4
2664 Male, age 75, both hemispheres 39.9
1839 Male, age 51, unknown 39.6
1895 Male, age 76, right hemisphere 38.8
1913 Female, age 42, unknown 38.8
1995 Male, age 72, unknown 32.3
Ventral tegmental area
nTPM: 55.3
2410 Female, age 72, unknown 65.1
1915 Female, age 42, unknown 58.6
2218 Male, age 76, both hemispheres 56.5
1942 Male, age 51, unknown 53.8
2021 Male, age 53, unknown 51.4
2223 Female, age 72, unknown 46.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 139

Max nTPM: 90.1
Min nTPM: 8.5
Std nTPM: 16.6
Median nTPM: 38.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 72.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 72.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 70.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 69.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 7.7
Sample A Female 32.1
Sample B Female 17.5
Sample C Male 30.6
Sample D Male 7.7
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 53.5
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 23.6
Sample C Male 25.6
Sample D Male 53.5
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 28.8
Min nTPM: 20.1
Sample B Female 22.3
Sample C Male 28.8
Sample D Male 20.1
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 37.5
Min nTPM: 16.6
Sample A Female 37.5
Sample B Female 16.6
Sample C Male 21.0
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.2
Samples: 4

Max nTPM: 101.1
Min nTPM: 88.0
Sample A Male 101.1
Sample B Male 88.0
Sample C Female 88.2
Sample D Female 95.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.4
68637706 Antisense, RP_050126_01_D09, Mouse strain C57BL/6J (56 days, male) 8.4

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