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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.2
nTPM
Monaco:
38.6
nTPM
Schmiedel:
65.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
28.2
HPA sample
nTPM
gdT-cell nTPM: 20.6
Samples: 6
Max nTPM: 27.2
Min nTPM: 14.1
P10809_1007
17.9
P10809_1022
23.9
P10809_1041
27.2
P10809_1060
19.1
P10809_1077
21.2
P10809_1098
14.1
MAIT T-cell nTPM: 26.3
Samples: 6
Max nTPM: 32.9
Min nTPM: 17.9
P10809_1006
29.0
P10809_1024
30.6
P10809_1043
32.9
P10809_1062
19.7
P10809_1083
17.9
P10809_1097
27.6
Memory CD4 T-cell nTPM: 17.7
Samples: 6
Max nTPM: 21.4
Min nTPM: 12.4
P10809_1014
15.1
P10809_1026
12.4
P10809_1045
21.4
P10809_1064
18.1
P10809_1086
21.0
P10809_1113
18.2
Memory CD8 T-cell nTPM: 22.0
Samples: 5
Max nTPM: 27.7
Min nTPM: 9.1
P10809_1012
24.5
P10809_1027
25.7
P10809_1046
22.8
P10809_1065
27.7
P10809_1111
9.1
Naive CD4 T-cell nTPM: 28.2
Samples: 6
Max nTPM: 35.1
Min nTPM: 20.0
P10809_1015
20.0
P10809_1030
30.7
P10809_1049
35.1
P10809_1068
30.9
P10809_1085
31.0
P10809_1112
21.3
Naive CD8 T-cell nTPM: 21.6
Samples: 6
Max nTPM: 24.8
Min nTPM: 20.2
P10809_1016
20.2
P10809_1031
24.8
P10809_1050
20.6
P10809_1069
22.0
P10809_1087
20.4
P10809_1110
21.4
T-reg nTPM: 18.5
Samples: 6
Max nTPM: 22.6
Min nTPM: 13.8
P10809_1018
16.9
P10809_1037
20.1
P10809_1056
13.8
P10809_1075
21.5
P10809_1094
22.6
P10809_1106
15.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
38.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 30.9
Samples: 4
Max nTPM: 44.1
Min nTPM: 21.2
RHH5202_R3573
26.6
RHH5230_R3602
44.1
RHH5259_R3631
31.5
RHH5288_R3660
21.2
Effector memory CD8 T-cell nTPM: 32.2
Samples: 4
Max nTPM: 35.4
Min nTPM: 28.8
RHH5203_R3574
32.1
RHH5231_R3603
28.8
RHH5260_R3632
35.4
RHH5289_R3661
32.3
MAIT T-cell nTPM: 38.6
Samples: 4
Max nTPM: 58.8
Min nTPM: 23.4
RHH5233_R3605
29.7
RHH5205_R3576
58.8
RHH5262_R3634
23.4
RHH5297_R3663
42.6
Memory CD4 T-cell TFH nTPM: 37.3
Samples: 4
Max nTPM: 45.0
Min nTPM: 30.5
RHH5300_R3666
34.1
RHH5236_R3608
39.5
RHH5265_R3637
30.5
RHH5208_R3579
45.0
Memory CD4 T-cell Th1 nTPM: 20.6
Samples: 4
Max nTPM: 29.7
Min nTPM: 14.2
RHH5210_R3581
29.7
RHH5302_R3668
14.2
RHH5238_R3610
18.5
RHH5267_R3639
20.1
Memory CD4 T-cell Th1/Th17 nTPM: 31.5
Samples: 4
Max nTPM: 36.3
Min nTPM: 24.8
RHH5303_R3669
24.8
RHH5211_R3582
36.3
RHH5239_R3611
35.8
RHH5268_R3640
29.2
Memory CD4 T-cell Th17 nTPM: 33.8
Samples: 4
Max nTPM: 38.0
Min nTPM: 29.8
RHH5304_R3670
35.3
RHH5212_R3583
29.8
RHH5240_R3612
38.0
RHH5269_R3641
32.1
Memory CD4 T-cell Th2 nTPM: 38.2
Samples: 4
Max nTPM: 49.8
Min nTPM: 26.5
RHH5305_R3671
34.1
RHH5213_R3584
49.8
RHH5241_R3613
26.5
RHH5270_R3642
42.4
Naive CD4 T-cell nTPM: 38.1
Samples: 4
Max nTPM: 47.8
Min nTPM: 31.3
RHH5306_R3672
31.3
RHH5214_R3585
47.8
RHH5242_R3614
32.6
RHH5271_R3643
40.6
Naive CD8 T-cell nTPM: 38.4
Samples: 4
Max nTPM: 46.2
Min nTPM: 30.5
RHH5201_R3572
30.9
RHH5229_R3601
46.2
RHH5258_R3630
30.5
RHH5287_R3659
46.0
Non-Vd2 gdTCR nTPM: 26.4
Samples: 4
Max nTPM: 32.6
Min nTPM: 19.6
RHH5235_R3607
19.6
RHH5264_R3636
28.4
RHH5207_R3578
32.6
RHH5299_R3665
25.1
T-reg nTPM: 30.8
Samples: 4
Max nTPM: 40.3
Min nTPM: 21.6
RHH5301_R3667
21.9
RHH5237_R3609
21.6
RHH5266_R3638
39.4
RHH5209_R3580
40.3
Terminal effector memory CD4 T-cell nTPM: 37.8
Samples: 2
Max nTPM: 47.2
Min nTPM: 28.4
RHH5243_R3615
47.2
RHH5272_R3644
28.4
Terminal effector memory CD8 T-cell nTPM: 34.2
Samples: 4
Max nTPM: 40.5
Min nTPM: 27.2
RHH5232_R3604
40.5
RHH5204_R3575
27.2
RHH5261_R3633
29.8
RHH5296_R3662
39.4
Vd2 gdTCR nTPM: 35.1
Samples: 4
Max nTPM: 39.8
Min nTPM: 30.6
RHH5234_R3606
36.5
RHH5206_R3577
39.8
RHH5263_R3635
30.6
RHH5298_R3664
33.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
