MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.6 nTPM
HPA Brain:73.7 nTPM
GTEx:63.6 nTPM
FANTOM5:87.6 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:0.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.0
1830 Male, age 51, unknown 77.4
2586 Male, age 75, left hemisphere 74.4
1870 Female, age 42, unknown 67.1
2411 Female, age 72, unknown 66.6
1833 Male, age 53, unknown 64.9
2019 Male, age 18, unknown 60.7
2666 Male, age 74, left hemisphere 55.1
2828 Female, age 72, unknown 48.2
1827 Male, age 72, unknown 41.1
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 41.8
2750 Male, age 76, both hemispheres 55.1
2016 Female, age 72, unknown 52.3
1828 Male, age 53, unknown 45.3
2298 Female, age 72, unknown 29.5
2047 Male, age 72, unknown 27.0
Inferior colliculus
nTPM: 35.4
2849 Male, age 72, unknown 41.5
1848 Female, age 42, unknown 39.7
1890 Male, age 53, unknown 35.4
2097 Female, age 72, unknown 25.0
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 38.2
2502 Female, age 75, unknown 45.0
1947 Male, age 18, unknown 37.0
1795 Male, age 51, unknown 32.8
Periaquaductal grey, dorsal
nTPM: 36.6
2850 Male, age 76, both hemispheres 44.0
2464 Female, age 72, unknown 43.5
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 24.8
Periaquaductal grey, lateral
nTPM: 49.4
2272 Male, age 74, both hemispheres 57.9
2140 Male, age 76, both hemispheres 47.5
2053 Male, age 18, unknown 42.8
Pretectal area
nTPM: 36.0
1815 Male, age 53, unknown 48.9
2316 Male, age 76, right hemisphere 48.7
2407 Male, age 75, both hemispheres 43.4
2273 Male, age 74, both hemispheres 42.6
2825 Male, age 18, unknown 41.3
1817 Female, age 42, unknown 36.2
2007 Male, age 72, unknown 35.5
2224 Female, age 72, unknown 30.6
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 18.4
Red nucleus
nTPM: 73.7
1865 Male, age 51, unknown 93.7
2227 Male, age 72, unknown 85.5
2769 Male, age 72, unknown 84.8
1904 Male, age 53, unknown 81.4
2785 Male, age 18, unknown 75.3
1821 Female, age 72, unknown 74.8
2503 Female, age 72, unknown 71.5
2823 Male, age 76, right hemisphere 71.3
1954 Female, age 42, unknown 68.8
2588 Male, age 74, left hemisphere 66.2
2725 Female, age 75, unknown 60.1
2584 Male, age 75, left hemisphere 50.7
Substantia nigra
nTPM: 47.6
2590 Female, age 75, unknown 63.0
2583 Male, age 75, right hemisphere 62.6
2699 Male, age 18, unknown 61.6
2409 Female, age 72, unknown 53.1
1851 Male, age 51, unknown 52.1
1889 Female, age 72, unknown 40.9
1941 Male, age 53, unknown 37.8
2241 Male, age 72, unknown 36.6
2665 Male, age 74, both hemispheres 35.5
1916 Female, age 42, unknown 32.4
Superior colliculus
nTPM: 47.0
1913 Female, age 42, unknown 82.6
1995 Male, age 72, unknown 69.5
1839 Male, age 51, unknown 49.5
2587 Male, age 74, left hemisphere 47.5
2668 Female, age 75, unknown 44.5
1895 Male, age 76, right hemisphere 41.1
2664 Male, age 75, both hemispheres 40.8
1796 Male, age 53, unknown 39.1
2261 Male, age 18, unknown 28.9
2087 Female, age 72, unknown 26.4
Ventral tegmental area
nTPM: 51.3
2223 Female, age 72, unknown 76.9
2410 Female, age 72, unknown 56.5
1942 Male, age 51, unknown 47.4
2021 Male, age 53, unknown 47.0
1915 Female, age 42, unknown 40.2
2218 Male, age 76, both hemispheres 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.6
Samples: 139

Max nTPM: 190.3
Min nTPM: 20.9
Std nTPM: 29.5
Median nTPM: 56.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 190.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 173.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 157.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 135.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 132.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 119.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 118.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 110.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 110.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 109.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 107.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.6
FF:10158-103A5 76 years, female 87.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.3
Sample A Female 3.5
Sample B Female 3.3
Sample C Male 4.0
Sample D Male 4.8
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.4
Sample A Female 4.8
Sample B Female 3.4
Sample C Male 4.8
Sample D Male 3.4
Periaqueductal gray
nTPM: 3.9
Samples: 3

Max nTPM: 4.0
Min nTPM: 3.8
Sample B Female 3.9
Sample C Male 4.0
Sample D Male 3.8
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 4.3
Sample A Female 5.7
Sample B Female 9.2
Sample C Male 4.3
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.5
Sample B Male 0.0
Sample C Female 0.3
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68445101 Antisense, RP_050111_02_G07, Mouse strain C57BL/6J (56 days, male) 1.9
71015388 Antisense, RP_050725_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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