MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.0 nTPM
HPA Brain:74.4 nTPM
GTEx:173.0 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:147.3 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.7
2019 Male, age 18, unknown 84.1
2411 Female, age 72, unknown 72.0
1870 Female, age 42, unknown 65.3
1827 Male, age 72, unknown 60.8
2586 Male, age 75, left hemisphere 58.0
1833 Male, age 53, unknown 55.8
2666 Male, age 74, left hemisphere 51.5
1830 Male, age 51, unknown 50.7
2219 Male, age 76, both hemispheres 50.7
2828 Female, age 72, unknown 48.2
Dorsal raphe nucleus
nTPM: 74.4
2298 Female, age 72, unknown 99.5
1828 Male, age 53, unknown 73.0
2750 Male, age 76, both hemispheres 68.6
2047 Male, age 72, unknown 67.4
2016 Female, age 72, unknown 63.3
Inferior colliculus
nTPM: 61.1
2097 Female, age 72, unknown 78.8
1890 Male, age 53, unknown 61.9
1848 Female, age 42, unknown 55.3
2849 Male, age 72, unknown 48.2
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Periaquaductal grey, anterior
nTPM: 59.4
1947 Male, age 18, unknown 60.3
1795 Male, age 51, unknown 58.9
2502 Female, age 75, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 60.2
2850 Male, age 76, both hemispheres 71.6
2464 Female, age 72, unknown 59.2
1840 Male, age 53, unknown 56.4
1831 Male, age 72, unknown 53.3
Periaquaductal grey, lateral
nTPM: 55.7
2272 Male, age 74, both hemispheres 60.9
2140 Male, age 76, both hemispheres 54.6
2053 Male, age 18, unknown 51.5
Pretectal area
nTPM: 69.6
1817 Female, age 42, unknown 84.7
2007 Male, age 72, unknown 84.1
1816 Male, age 51, unknown 78.9
1944 Female, age 72, unknown 78.9
2273 Male, age 74, both hemispheres 73.7
2224 Female, age 72, unknown 72.8
2667 Female, age 75, unknown 72.0
1815 Male, age 53, unknown 71.2
2316 Male, age 76, right hemisphere 60.9
2825 Male, age 18, unknown 48.8
2407 Male, age 75, both hemispheres 39.4
Red nucleus
nTPM: 66.6
1821 Female, age 72, unknown 97.1
1865 Male, age 51, unknown 73.2
2503 Female, age 72, unknown 70.7
2785 Male, age 18, unknown 70.5
1904 Male, age 53, unknown 70.0
2725 Female, age 75, unknown 69.9
2769 Male, age 72, unknown 67.5
1954 Female, age 42, unknown 65.7
2227 Male, age 72, unknown 65.4
2823 Male, age 76, right hemisphere 64.2
2588 Male, age 74, left hemisphere 43.4
2584 Male, age 75, left hemisphere 42.1
Substantia nigra
nTPM: 70.2
1889 Female, age 72, unknown 85.9
1916 Female, age 42, unknown 84.0
1851 Male, age 51, unknown 82.0
2241 Male, age 72, unknown 81.8
1941 Male, age 53, unknown 71.4
2409 Female, age 72, unknown 63.0
2699 Male, age 18, unknown 61.8
2665 Male, age 74, both hemispheres 61.2
2590 Female, age 75, unknown 57.1
2583 Male, age 75, right hemisphere 53.6
Superior colliculus
nTPM: 61.6
1796 Male, age 53, unknown 67.6
2587 Male, age 74, left hemisphere 67.1
1913 Female, age 42, unknown 66.8
2668 Female, age 75, unknown 65.9
2261 Male, age 18, unknown 65.6
1895 Male, age 76, right hemisphere 61.9
2087 Female, age 72, unknown 61.5
1995 Male, age 72, unknown 59.2
1839 Male, age 51, unknown 54.3
2664 Male, age 75, both hemispheres 45.8
Ventral tegmental area
nTPM: 72.0
2410 Female, age 72, unknown 88.8
1915 Female, age 42, unknown 78.4
2218 Male, age 76, both hemispheres 72.7
2223 Female, age 72, unknown 70.4
1942 Male, age 51, unknown 60.8
2021 Male, age 53, unknown 60.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 173.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.0
Samples: 139

Max nTPM: 278.9
Min nTPM: 108.0
Std nTPM: 31.8
Median nTPM: 168.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 278.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 273.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 263.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 262.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 258.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 247.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 243.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 236.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 235.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 230.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 228.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.3
FF:10158-103A5 76 years, female 93.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.6
Samples: 4

Max nTPM: 70.7
Min nTPM: 44.6
Sample A Female 70.7
Sample B Female 46.3
Sample C Male 44.6
Sample D Male 44.6
Midbrain
nTPM: 55.6
Samples: 4

Max nTPM: 73.2
Min nTPM: 45.3
Sample A Female 73.2
Sample B Female 55.3
Sample C Male 48.7
Sample D Male 45.3
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 50.0
Min nTPM: 47.9
Sample B Female 49.0
Sample C Male 47.9
Sample D Male 50.0
Superior colliculi
nTPM: 58.4
Samples: 4

Max nTPM: 68.9
Min nTPM: 51.9
Sample A Female 68.9
Sample B Female 60.6
Sample C Male 51.9
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.3
Samples: 4

Max nTPM: 151.4
Min nTPM: 144.1
Sample A Male 151.4
Sample B Male 146.4
Sample C Female 144.1
Sample D Female 147.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
69134163 Antisense, RP_050321_02_D10, Mouse strain C57BL/6J (56 days, male) 3.3

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