HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:29.1 nTPM
HPA Brain:49.9 nTPM
GTEx:29.1 nTPM
FANTOM5:261.4 Scaled Tags Per Million
Pig:52.3 nTPM
Mouse:62.4 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035180
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.9
Sample id Sample description nTPM
Hippocampus
nTPM: 41.0
1898 Male, age 80, left hemisphere 48.5
2529 Female, age 94, left hemisphere 47.7
2621 Female, age 67, right hemisphere 40.6
1911 Female, age 85, right hemisphere 39.0
2148 Female, age 91, left hemisphere 35.3
1855 Male, age 76, left hemisphere 34.7
Dentate gyrus
nTPM: 42.3
2530 Female, age 94, left hemisphere 54.6
2528 Male, age 74, both hemispheres 51.2
2246 Female, age 85, both hemispheres 40.3
2010 Male, age 76, both hemispheres 39.4
1927 Female, age 91, both hemispheres 37.9
2531 Female, age 67, both hemispheres 30.2
Entorhinal gyrus
nTPM: 36.7
2117 Female, age 91, right hemisphere 57.4
1938 Female, age 85, left hemisphere 39.4
2764 Male, age 80, right hemisphere 37.2
1787 Male, age 76, left hemisphere 34.8
2613 Female, age 94, left hemisphere 27.5
2686 Male, age 75, right hemisphere 24.1
Hippocampus, CA1
nTPM: 36.3
2527 Male, age 74, both hemispheres 46.5
2082 Female, age 91, right hemisphere 36.8
1873 Female, age 85, both hemispheres 35.1
2749 Male, age 80, left hemisphere 34.0
2045 Male, age 76, both hemispheres 29.1
Hippocampus, CA2
nTPM: 49.9
1940 Female, age 85, left hemisphere 62.2
2249 Male, age 74, both hemispheres 58.1
1963 Male, age 80, left hemisphere 52.8
1892 Male, age 76, both hemispheres 43.9
2113 Female, age 91, right hemisphere 43.1
2437 Female, age 94, left hemisphere 39.3
Hippocampus, CA3
nTPM: 38.6
1891 Female, age 85, both hemispheres 59.3
1867 Male, age 76, both hemispheres 43.6
2436 Male, age 74, both hemispheres 42.6
2137 Male, age 80, left hemisphere 29.9
2620 Female, age 94, left hemisphere 28.9
2861 Female, age 67, both hemispheres 27.4
Parahippocampal cortex
nTPM: 39.5
1990 Female, age 91, right hemisphere 52.2
2250 Female, age 67, right hemisphere 49.2
1850 Male, age 80, both hemispheres 46.4
2532 Female, age 72, left hemisphere 43.7
1933 Female, age 85, both hemispheres 41.0
2693 Female, age 94, both hemispheres 38.3
2692 Male, age 74, both hemispheres 36.9
2245 Female, age 91, both hemispheres 35.0
2018 Male, age 76, both hemispheres 31.4
2622 Female, age 67, right hemisphere 20.7
Perirhinal gyrus
nTPM: 41.4
1841 Female, age 85, right hemisphere 46.2
2521 Female, age 94, right hemisphere 46.1
2848 Male, age 76, right hemisphere 43.4
1794 Male, age 80, right hemisphere 35.9
1847 Female, age 91, left hemisphere 35.5
Subiculum
nTPM: 45.9
2042 Male, age 76, both hemispheres 58.1
1901 Male, age 80, both hemispheres 55.3
1977 Female, age 85, both hemispheres 52.0
2729 Female, age 91, right hemisphere 43.2
2619 Male, age 74, both hemispheres 34.5
2438 Female, age 94, left hemisphere 32.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.1
Samples: 197

Max nTPM: 265.6
Min nTPM: 10.8
Std nTPM: 22.0
Median nTPM: 25.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 265.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 129.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 83.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 81.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 76.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 72.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 63.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 62.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 56.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 55.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 54.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 261.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 261.4
FF:10153-102I9 76 years, female 319.3
FF:10169-103B7 60 years, female 203.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 52.3
Pig sample Sample description nTPM
Subiculum
nTPM: 48.3
Samples: 4

Max nTPM: 57.3
Min nTPM: 37.3
Sample A Female 57.3
Sample B Female 37.3
Sample C Male 45.0
Sample D Male 53.5
Dorsal hippocampus
nTPM: 43.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 37.3
Sample A Female 44.8
Sample B Female 37.3
Sample C Male 53.5
Sample D Male 38.8
Entorhinal cortex
nTPM: 52.3
Samples: 4

Max nTPM: 59.2
Min nTPM: 45.9
Sample A Female 57.3
Sample B Female 59.2
Sample C Male 45.9
Sample D Male 46.7
Ventral hippocampus
nTPM: 43.0
Samples: 4

Max nTPM: 50.9
Min nTPM: 33.7
Sample A Female 50.9
Sample B Female 33.7
Sample C Male 48.3
Sample D Male 39.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.5
Samples: 4

Max nTPM: 67.6
Min nTPM: 58.3
Sample A Male 58.3
Sample B Male 63.2
Sample C Female 67.6
Sample D Female 60.8
Hippocampal formation
nTPM: 50.3
Samples: 4

Max nTPM: 63.1
Min nTPM: 40.5
Sample A Male 40.5
Sample B Male 51.9
Sample C Female 63.1
Sample D Female 45.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
68845729 Antisense, RP_050224_02_D07, Mouse strain C57BL/6J (56 days, male) 6.8

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