MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:234.0 nTPM
HPA Brain:261.4 nTPM
GTEx:234.0 nTPM
FANTOM5:375.5 Scaled Tags Per Million
Pig:546.4 nTPM
Mouse:448.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 261.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 240.4
2411 Female, age 72, unknown 293.5
1870 Female, age 42, unknown 272.2
2019 Male, age 18, unknown 245.4
1833 Male, age 53, unknown 244.1
2666 Male, age 74, left hemisphere 229.7
1827 Male, age 72, unknown 227.7
1830 Male, age 51, unknown 225.8
2828 Female, age 72, unknown 225.4
2586 Male, age 75, left hemisphere 222.6
2219 Male, age 76, both hemispheres 217.5
Dorsal raphe nucleus
nTPM: 235.6
2750 Male, age 76, both hemispheres 275.3
2298 Female, age 72, unknown 256.1
2047 Male, age 72, unknown 226.8
2016 Female, age 72, unknown 210.8
1828 Male, age 53, unknown 209.2
Inferior colliculus
nTPM: 211.4
2097 Female, age 72, unknown 253.2
1890 Male, age 53, unknown 210.1
1848 Female, age 42, unknown 201.1
2849 Male, age 72, unknown 181.3
Median raphe nucleus
nTPM: 243.0
2220 Male, age 76, midline 243.0
Periaquaductal grey, anterior
nTPM: 246.4
1947 Male, age 18, unknown 263.7
2502 Female, age 75, unknown 238.8
1795 Male, age 51, unknown 236.8
Periaquaductal grey, dorsal
nTPM: 195.3
2464 Female, age 72, unknown 205.2
1831 Male, age 72, unknown 202.0
2850 Male, age 76, both hemispheres 192.7
1840 Male, age 53, unknown 181.2
Periaquaductal grey, lateral
nTPM: 194.9
2053 Male, age 18, unknown 215.9
2272 Male, age 74, both hemispheres 205.7
2140 Male, age 76, both hemispheres 163.1
Pretectal area
nTPM: 234.6
1815 Male, age 53, unknown 284.3
2007 Male, age 72, unknown 274.3
1817 Female, age 42, unknown 262.7
1816 Male, age 51, unknown 255.5
1944 Female, age 72, unknown 237.2
2224 Female, age 72, unknown 229.0
2667 Female, age 75, unknown 219.5
2825 Male, age 18, unknown 212.2
2273 Male, age 74, both hemispheres 211.1
2316 Male, age 76, right hemisphere 199.0
2407 Male, age 75, both hemispheres 195.7
Red nucleus
nTPM: 261.4
1821 Female, age 72, unknown 309.6
1904 Male, age 53, unknown 301.4
2503 Female, age 72, unknown 290.7
1954 Female, age 42, unknown 281.2
1865 Male, age 51, unknown 270.2
2785 Male, age 18, unknown 262.4
2725 Female, age 75, unknown 254.2
2823 Male, age 76, right hemisphere 247.2
2588 Male, age 74, left hemisphere 242.9
2769 Male, age 72, unknown 239.9
2227 Male, age 72, unknown 236.5
2584 Male, age 75, left hemisphere 200.4
Substantia nigra
nTPM: 239.5
2241 Male, age 72, unknown 281.7
2409 Female, age 72, unknown 261.3
1889 Female, age 72, unknown 258.3
1851 Male, age 51, unknown 257.3
1916 Female, age 42, unknown 242.9
2590 Female, age 75, unknown 239.7
1941 Male, age 53, unknown 238.1
2583 Male, age 75, right hemisphere 231.3
2699 Male, age 18, unknown 201.4
2665 Male, age 74, both hemispheres 183.4
Superior colliculus
nTPM: 230.5
1913 Female, age 42, unknown 261.6
2668 Female, age 75, unknown 254.4
2587 Male, age 74, left hemisphere 252.3
2261 Male, age 18, unknown 240.2
1995 Male, age 72, unknown 237.2
1895 Male, age 76, right hemisphere 221.3
1796 Male, age 53, unknown 216.5
1839 Male, age 51, unknown 216.3
2087 Female, age 72, unknown 214.0
2664 Male, age 75, both hemispheres 191.5
Ventral tegmental area
nTPM: 237.4
2410 Female, age 72, unknown 278.7
1915 Female, age 42, unknown 242.1
2218 Male, age 76, both hemispheres 238.0
2223 Female, age 72, unknown 233.3
1942 Male, age 51, unknown 223.7
2021 Male, age 53, unknown 208.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 234.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 234.0
Samples: 139

Max nTPM: 390.3
Min nTPM: 131.4
Std nTPM: 50.7
Median nTPM: 229.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 390.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 388.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 386.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 380.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 354.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 334.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 330.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 318.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 315.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 308.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 305.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 375.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 375.5
FF:10158-103A5 76 years, female 375.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 546.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 520.2
Samples: 4

Max nTPM: 663.8
Min nTPM: 381.8
Sample A Female 663.8
Sample B Female 381.8
Sample C Male 543.7
Sample D Male 491.6
Midbrain
nTPM: 546.4
Samples: 4

Max nTPM: 793.1
Min nTPM: 438.9
Sample A Female 793.1
Sample B Female 513.1
Sample C Male 440.6
Sample D Male 438.9
Periaqueductal gray
nTPM: 401.5
Samples: 3

Max nTPM: 422.4
Min nTPM: 368.0
Sample B Female 422.4
Sample C Male 414.2
Sample D Male 368.0
Superior colliculi
nTPM: 491.8
Samples: 4

Max nTPM: 580.7
Min nTPM: 361.7
Sample A Female 580.7
Sample B Female 361.7
Sample C Male 546.8
Sample D Male 477.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 448.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 448.3
Samples: 4

Max nTPM: 456.9
Min nTPM: 439.9
Sample A Male 452.3
Sample B Male 439.9
Sample C Female 444.2
Sample D Female 456.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
1131 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 5.5
1130 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 4.7
70566163 Antisense, RP_050628_02_D11, Mouse strain C57BL/6J (56 days, male) 0.1
1132 Sense, RPS_Baylor_37069, Mouse strain C57BL/6J (56 days, male) 0.0
73931419 Antisense, RP_051214_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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