MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:160.6 nTPM
HPA Brain:108.6 nTPM
GTEx:160.6 nTPM
FANTOM5:397.0 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:208.9 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 108.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.3
2411 Female, age 72, unknown 81.6
1827 Male, age 72, unknown 75.2
2828 Female, age 72, unknown 64.9
1870 Female, age 42, unknown 57.6
2219 Male, age 76, both hemispheres 51.4
1833 Male, age 53, unknown 47.9
2019 Male, age 18, unknown 46.0
2586 Male, age 75, left hemisphere 43.7
2666 Male, age 74, left hemisphere 42.6
1830 Male, age 51, unknown 42.2
Dorsal raphe nucleus
nTPM: 72.3
2298 Female, age 72, unknown 99.0
2047 Male, age 72, unknown 83.6
2750 Male, age 76, both hemispheres 73.2
1828 Male, age 53, unknown 55.9
2016 Female, age 72, unknown 50.1
Inferior colliculus
nTPM: 54.2
2097 Female, age 72, unknown 71.9
1848 Female, age 42, unknown 53.0
1890 Male, age 53, unknown 46.4
2849 Male, age 72, unknown 45.3
Median raphe nucleus
nTPM: 108.6
2220 Male, age 76, midline 108.6
Periaquaductal grey, anterior
nTPM: 73.6
1795 Male, age 51, unknown 81.5
1947 Male, age 18, unknown 72.3
2502 Female, age 75, unknown 67.1
Periaquaductal grey, dorsal
nTPM: 55.2
2850 Male, age 76, both hemispheres 65.1
1840 Male, age 53, unknown 55.4
1831 Male, age 72, unknown 50.2
2464 Female, age 72, unknown 50.0
Periaquaductal grey, lateral
nTPM: 57.0
2053 Male, age 18, unknown 58.6
2272 Male, age 74, both hemispheres 57.0
2140 Male, age 76, both hemispheres 55.4
Pretectal area
nTPM: 73.1
1816 Male, age 51, unknown 104.0
1944 Female, age 72, unknown 94.5
1817 Female, age 42, unknown 89.4
2007 Male, age 72, unknown 87.6
1815 Male, age 53, unknown 80.2
2224 Female, age 72, unknown 75.4
2667 Female, age 75, unknown 62.4
2825 Male, age 18, unknown 61.6
2316 Male, age 76, right hemisphere 52.3
2273 Male, age 74, both hemispheres 50.8
2407 Male, age 75, both hemispheres 45.9
Red nucleus
nTPM: 51.0
2725 Female, age 75, unknown 76.2
1821 Female, age 72, unknown 61.0
1954 Female, age 42, unknown 55.3
2588 Male, age 74, left hemisphere 51.5
2785 Male, age 18, unknown 51.1
2584 Male, age 75, left hemisphere 51.0
2823 Male, age 76, right hemisphere 50.0
1865 Male, age 51, unknown 48.3
1904 Male, age 53, unknown 45.0
2503 Female, age 72, unknown 43.1
2769 Male, age 72, unknown 40.5
2227 Male, age 72, unknown 38.9
Substantia nigra
nTPM: 82.3
1916 Female, age 42, unknown 131.0
2241 Male, age 72, unknown 106.5
1941 Male, age 53, unknown 93.3
1889 Female, age 72, unknown 89.6
1851 Male, age 51, unknown 83.6
2665 Male, age 74, both hemispheres 77.2
2699 Male, age 18, unknown 69.3
2409 Female, age 72, unknown 67.2
2590 Female, age 75, unknown 63.0
2583 Male, age 75, right hemisphere 42.3
Superior colliculus
nTPM: 55.6
2261 Male, age 18, unknown 79.3
1796 Male, age 53, unknown 75.0
2087 Female, age 72, unknown 73.8
2587 Male, age 74, left hemisphere 60.5
2668 Female, age 75, unknown 54.8
1913 Female, age 42, unknown 49.3
1895 Male, age 76, right hemisphere 46.4
1839 Male, age 51, unknown 46.0
1995 Male, age 72, unknown 39.2
2664 Male, age 75, both hemispheres 32.0
Ventral tegmental area
nTPM: 79.8
2218 Male, age 76, both hemispheres 92.6
1915 Female, age 42, unknown 89.7
2410 Female, age 72, unknown 87.7
2021 Male, age 53, unknown 75.1
1942 Male, age 51, unknown 70.2
2223 Female, age 72, unknown 63.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 160.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 160.6
Samples: 139

Max nTPM: 405.0
Min nTPM: 51.6
Std nTPM: 77.7
Median nTPM: 142.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 405.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 367.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 360.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 359.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 358.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 345.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 341.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 315.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 309.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 304.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 300.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 397.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 397.0
FF:10158-103A5 76 years, female 397.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 28.5
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 28.5
Sample C Male 17.4
Sample D Male 18.6
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 24.2
Min nTPM: 12.4
Sample A Female 22.8
Sample B Female 24.2
Sample C Male 12.4
Sample D Male 17.1
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 30.7
Min nTPM: 18.7
Sample B Female 22.9
Sample C Male 30.7
Sample D Male 18.7
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 44.8
Min nTPM: 17.4
Sample A Female 22.5
Sample B Female 44.8
Sample C Male 17.4
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 208.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 208.9
Samples: 4

Max nTPM: 221.6
Min nTPM: 193.8
Sample A Male 210.6
Sample B Male 209.6
Sample C Female 193.8
Sample D Female 221.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69736076 Antisense, RP_050503_04_B06, Mouse strain C57BL/6J (56 days, male) 12.6
74736408 Antisense, RP_060306_01_D07, Mouse strain C57BL/6J (56 days, male) 1.1

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