MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA Brain:71.5 nTPM
GTEx:53.3 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:43.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.7
2666 Male, age 74, left hemisphere 76.1
2828 Female, age 72, unknown 73.9
1870 Female, age 42, unknown 66.7
1830 Male, age 51, unknown 65.6
1833 Male, age 53, unknown 65.2
1827 Male, age 72, unknown 63.3
2219 Male, age 76, both hemispheres 60.6
2411 Female, age 72, unknown 60.0
2586 Male, age 75, left hemisphere 57.9
2019 Male, age 18, unknown 57.4
Dorsal raphe nucleus
nTPM: 61.1
2016 Female, age 72, unknown 70.5
2750 Male, age 76, both hemispheres 62.4
1828 Male, age 53, unknown 60.5
2047 Male, age 72, unknown 57.9
2298 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 64.7
2849 Male, age 72, unknown 74.9
1848 Female, age 42, unknown 65.6
1890 Male, age 53, unknown 61.4
2097 Female, age 72, unknown 56.8
Median raphe nucleus
nTPM: 65.7
2220 Male, age 76, midline 65.7
Periaquaductal grey, anterior
nTPM: 58.3
2502 Female, age 75, unknown 61.7
1947 Male, age 18, unknown 57.1
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 66.2
2850 Male, age 76, both hemispheres 76.6
1831 Male, age 72, unknown 67.7
1840 Male, age 53, unknown 61.8
2464 Female, age 72, unknown 58.5
Periaquaductal grey, lateral
nTPM: 63.6
2140 Male, age 76, both hemispheres 71.7
2053 Male, age 18, unknown 62.5
2272 Male, age 74, both hemispheres 56.5
Pretectal area
nTPM: 61.4
1815 Male, age 53, unknown 69.1
1817 Female, age 42, unknown 68.4
2825 Male, age 18, unknown 64.8
2407 Male, age 75, both hemispheres 64.0
2316 Male, age 76, right hemisphere 59.9
2224 Female, age 72, unknown 59.7
1944 Female, age 72, unknown 59.4
2667 Female, age 75, unknown 58.6
1816 Male, age 51, unknown 58.0
2007 Male, age 72, unknown 57.2
2273 Male, age 74, both hemispheres 56.7
Red nucleus
nTPM: 71.5
2725 Female, age 75, unknown 82.0
1865 Male, age 51, unknown 77.2
2503 Female, age 72, unknown 75.4
1821 Female, age 72, unknown 74.0
2823 Male, age 76, right hemisphere 72.6
2588 Male, age 74, left hemisphere 72.3
2769 Male, age 72, unknown 72.1
1904 Male, age 53, unknown 71.7
1954 Female, age 42, unknown 70.4
2227 Male, age 72, unknown 65.8
2785 Male, age 18, unknown 63.5
2584 Male, age 75, left hemisphere 60.9
Substantia nigra
nTPM: 62.0
2699 Male, age 18, unknown 82.3
2665 Male, age 74, both hemispheres 70.0
2409 Female, age 72, unknown 65.9
1889 Female, age 72, unknown 63.3
1851 Male, age 51, unknown 62.1
1916 Female, age 42, unknown 60.2
1941 Male, age 53, unknown 58.6
2583 Male, age 75, right hemisphere 54.2
2590 Female, age 75, unknown 51.9
2241 Male, age 72, unknown 51.8
Superior colliculus
nTPM: 62.8
1995 Male, age 72, unknown 75.9
2587 Male, age 74, left hemisphere 69.0
1913 Female, age 42, unknown 68.6
1839 Male, age 51, unknown 64.5
2668 Female, age 75, unknown 63.5
1796 Male, age 53, unknown 62.9
1895 Male, age 76, right hemisphere 61.6
2261 Male, age 18, unknown 57.2
2087 Female, age 72, unknown 55.4
2664 Male, age 75, both hemispheres 49.8
Ventral tegmental area
nTPM: 65.1
2218 Male, age 76, both hemispheres 70.8
2021 Male, age 53, unknown 66.1
2223 Female, age 72, unknown 65.4
2410 Female, age 72, unknown 63.2
1915 Female, age 42, unknown 63.0
1942 Male, age 51, unknown 62.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 139

Max nTPM: 109.8
Min nTPM: 29.2
Std nTPM: 13.5
Median nTPM: 51.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 109.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 94.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 86.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 81.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 78.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 78.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 77.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 34.1
Min nTPM: 23.5
Sample A Female 29.4
Sample B Female 23.5
Sample C Male 26.2
Sample D Male 34.1
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 45.7
Min nTPM: 22.7
Sample A Female 45.7
Sample B Female 26.9
Sample C Male 23.3
Sample D Male 22.7
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 26.3
Min nTPM: 24.4
Sample B Female 25.2
Sample C Male 26.3
Sample D Male 24.4
Superior colliculi
nTPM: 26.0
Samples: 4

Max nTPM: 28.5
Min nTPM: 21.8
Sample A Female 28.5
Sample B Female 21.8
Sample C Male 25.4
Sample D Male 28.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.7
Samples: 4

Max nTPM: 45.6
Min nTPM: 42.5
Sample A Male 42.8
Sample B Male 42.5
Sample C Female 45.6
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68744934 Antisense, RP_050208_01_H10, Mouse strain C57BL/6J (56 days, male) 1.3

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