HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:47.0 nTPM
HPA Brain:66.1 nTPM
GTEx:47.0 nTPM
FANTOM5:96.6 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:43.2 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037477Antibody HPA037478
Glial cells LowHigh
Neuronal cells LowHigh



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 66.1
Sample id Sample description nTPM
Hippocampus
nTPM: 66.1
2529 Female, age 94, left hemisphere 73.6
1855 Male, age 76, left hemisphere 70.1
2621 Female, age 67, right hemisphere 68.4
2148 Female, age 91, left hemisphere 65.3
1911 Female, age 85, right hemisphere 61.6
1898 Male, age 80, left hemisphere 57.4
Dentate gyrus
nTPM: 59.6
2530 Female, age 94, left hemisphere 68.2
2531 Female, age 67, both hemispheres 67.3
2246 Female, age 85, both hemispheres 59.1
2010 Male, age 76, both hemispheres 57.7
1927 Female, age 91, both hemispheres 55.0
2528 Male, age 74, both hemispheres 50.3
Entorhinal gyrus
nTPM: 57.1
2117 Female, age 91, right hemisphere 70.6
1787 Male, age 76, left hemisphere 62.6
2686 Male, age 75, right hemisphere 57.7
1938 Female, age 85, left hemisphere 53.9
2764 Male, age 80, right hemisphere 52.7
2613 Female, age 94, left hemisphere 45.4
Hippocampus, CA1
nTPM: 57.1
2527 Male, age 74, both hemispheres 65.0
1873 Female, age 85, both hemispheres 60.9
2045 Male, age 76, both hemispheres 54.2
2082 Female, age 91, right hemisphere 54.2
2749 Male, age 80, left hemisphere 51.1
Hippocampus, CA2
nTPM: 57.9
2437 Female, age 94, left hemisphere 64.3
1940 Female, age 85, left hemisphere 60.7
2249 Male, age 74, both hemispheres 57.4
1963 Male, age 80, left hemisphere 56.6
2113 Female, age 91, right hemisphere 56.4
1892 Male, age 76, both hemispheres 51.8
Hippocampus, CA3
nTPM: 56.8
1891 Female, age 85, both hemispheres 62.3
2861 Female, age 67, both hemispheres 59.7
1867 Male, age 76, both hemispheres 57.0
2620 Female, age 94, left hemisphere 55.9
2137 Male, age 80, left hemisphere 54.2
2436 Male, age 74, both hemispheres 51.7
Parahippocampal cortex
nTPM: 56.5
2532 Female, age 72, left hemisphere 66.5
2018 Male, age 76, both hemispheres 62.2
2245 Female, age 91, both hemispheres 61.3
2692 Male, age 74, both hemispheres 60.6
1850 Male, age 80, both hemispheres 57.9
1933 Female, age 85, both hemispheres 55.9
1990 Female, age 91, right hemisphere 54.3
2250 Female, age 67, right hemisphere 52.6
2622 Female, age 67, right hemisphere 52.0
2693 Female, age 94, both hemispheres 41.6
Perirhinal gyrus
nTPM: 51.9
1794 Male, age 80, right hemisphere 56.1
1847 Female, age 91, left hemisphere 54.0
1841 Female, age 85, right hemisphere 53.6
2848 Male, age 76, right hemisphere 48.5
2521 Female, age 94, right hemisphere 47.4
Subiculum
nTPM: 62.6
2042 Male, age 76, both hemispheres 70.4
2438 Female, age 94, left hemisphere 69.8
1901 Male, age 80, both hemispheres 64.5
2619 Male, age 74, both hemispheres 60.9
1977 Female, age 85, both hemispheres 56.2
2729 Female, age 91, right hemisphere 53.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.0
Samples: 197

Max nTPM: 91.0
Min nTPM: 28.5
Std nTPM: 11.1
Median nTPM: 45.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 91.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 84.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 83.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 83.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 79.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 77.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 75.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 74.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 69.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 68.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 66.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 96.6
FF:10153-102I9 76 years, female 96.7
FF:10169-103B7 60 years, female 96.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Subiculum
nTPM: 19.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.7
Sample A Female 23.4
Sample B Female 19.8
Sample C Male 17.7
Sample D Male 18.7
Dorsal hippocampus
nTPM: 25.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 19.6
Sample A Female 32.3
Sample B Female 22.5
Sample C Male 25.7
Sample D Male 19.6
Entorhinal cortex
nTPM: 19.0
Samples: 4

Max nTPM: 20.3
Min nTPM: 17.1
Sample A Female 19.6
Sample B Female 20.3
Sample C Male 18.8
Sample D Male 17.1
Ventral hippocampus
nTPM: 22.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 16.7
Sample A Female 22.6
Sample B Female 16.7
Sample C Male 24.7
Sample D Male 25.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.1
Samples: 4

Max nTPM: 45.2
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 41.1
Sample C Female 42.8
Sample D Female 45.2
Hippocampal formation
nTPM: 43.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 40.5
Sample A Male 40.5
Sample B Male 43.1
Sample C Female 46.3
Sample D Female 43.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
68744934 Antisense, RP_050208_01_H10, Mouse strain C57BL/6J (56 days, male) 2.2

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