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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
513.3
nTPM
Monaco:
716.7
nTPM
Schmiedel:
3.3
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
513.3
HPA sample
nTPM
gdT-cell nTPM: 513.3
Samples: 6
Max nTPM: 700.9
Min nTPM: 354.1
P10809_1007
532.5
P10809_1022
700.9
P10809_1041
553.5
P10809_1060
354.1
P10809_1077
458.5
P10809_1098
480.0
MAIT T-cell nTPM: 58.2
Samples: 6
Max nTPM: 83.7
Min nTPM: 46.0
P10809_1006
83.7
P10809_1024
46.0
P10809_1043
55.4
P10809_1062
55.8
P10809_1083
55.8
P10809_1097
52.5
Memory CD4 T-cell nTPM: 3.6
Samples: 6
Max nTPM: 8.6
Min nTPM: 1.4
P10809_1014
1.4
P10809_1026
1.5
P10809_1045
8.6
P10809_1064
5.2
P10809_1086
2.8
P10809_1113
1.8
Memory CD8 T-cell nTPM: 218.1
Samples: 5
Max nTPM: 324.1
Min nTPM: 105.1
P10809_1012
105.1
P10809_1027
232.0
P10809_1046
319.3
P10809_1065
324.1
P10809_1111
110.1
Naive CD4 T-cell nTPM: 1.6
Samples: 6
Max nTPM: 5.4
Min nTPM: 0.3
P10809_1015
1.3
P10809_1030
0.3
P10809_1049
0.8
P10809_1068
1.2
P10809_1085
5.4
P10809_1112
0.4
Naive CD8 T-cell nTPM: 219.5
Samples: 6
Max nTPM: 581.1
Min nTPM: 32.8
P10809_1016
32.8
P10809_1031
153.4
P10809_1050
226.1
P10809_1069
258.7
P10809_1087
581.1
P10809_1110
64.6
T-reg nTPM: 1.4
Samples: 6
Max nTPM: 3.5
Min nTPM: 0.4
P10809_1018
0.8
P10809_1037
2.7
P10809_1056
3.5
P10809_1075
0.5
P10809_1094
0.6
P10809_1106
0.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
716.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 56.0
Samples: 4
Max nTPM: 91.8
Min nTPM: 39.9
RHH5202_R3573
52.5
RHH5230_R3602
39.9
RHH5259_R3631
39.9
RHH5288_R3660
91.8
Effector memory CD8 T-cell nTPM: 373.8
Samples: 4
Max nTPM: 495.4
Min nTPM: 231.7
RHH5203_R3574
231.7
RHH5231_R3603
437.6
RHH5260_R3632
330.3
RHH5289_R3661
495.4
MAIT T-cell nTPM: 90.8
Samples: 4
Max nTPM: 125.3
Min nTPM: 33.4
RHH5233_R3605
100.3
RHH5205_R3576
125.3
RHH5262_R3634
33.4
RHH5297_R3663
104.0
Memory CD4 T-cell TFH nTPM: 14.4
Samples: 4
Max nTPM: 25.2
Min nTPM: 5.6
RHH5300_R3666
13.6
RHH5236_R3608
5.6
RHH5265_R3637
13.0
RHH5208_R3579
25.2
Memory CD4 T-cell Th1 nTPM: 14.3
Samples: 4
Max nTPM: 16.6
Min nTPM: 11.8
RHH5210_R3581
14.4
RHH5302_R3668
16.6
RHH5238_R3610
11.8
RHH5267_R3639
14.2
Memory CD4 T-cell Th1/Th17 nTPM: 11.9
Samples: 4
Max nTPM: 16.6
Min nTPM: 8.9
RHH5303_R3669
8.9
RHH5211_R3582
12.3
RHH5239_R3611
9.6
RHH5268_R3640
16.6
Memory CD4 T-cell Th17 nTPM: 14.2
Samples: 4
Max nTPM: 21.1
Min nTPM: 10.0
RHH5304_R3670
10.0
RHH5212_R3583
21.1
RHH5240_R3612
11.9
RHH5269_R3641
13.8
Memory CD4 T-cell Th2 nTPM: 11.5
Samples: 4
Max nTPM: 16.4
Min nTPM: 7.0
RHH5305_R3671
16.4
RHH5213_R3584
14.1
RHH5241_R3613
8.5
RHH5270_R3642
7.0
Naive CD4 T-cell nTPM: 15.8
Samples: 4
Max nTPM: 22.9
Min nTPM: 8.4
RHH5306_R3672
16.5
RHH5214_R3585
15.2
RHH5242_R3614
22.9
RHH5271_R3643
8.4
Naive CD8 T-cell nTPM: 6.9
Samples: 4
Max nTPM: 9.8
Min nTPM: 4.3
RHH5201_R3572
4.3
RHH5229_R3601
7.7
RHH5258_R3630
5.9
RHH5287_R3659
9.8
Non-Vd2 gdTCR nTPM: 664.9
Samples: 4
Max nTPM: 773.3
Min nTPM: 544.9
RHH5235_R3607
659.4
RHH5264_R3636
773.3
RHH5207_R3578
544.9
RHH5299_R3665
681.8
T-reg nTPM: 8.7
Samples: 4
Max nTPM: 12.0
Min nTPM: 5.0
RHH5301_R3667
8.7
RHH5237_R3609
9.1
RHH5266_R3638
5.0
RHH5209_R3580
12.0
Terminal effector memory CD4 T-cell nTPM: 146.6
Samples: 2
Max nTPM: 235.3
Min nTPM: 57.9
RHH5243_R3615
235.3
RHH5272_R3644
57.9
Terminal effector memory CD8 T-cell nTPM: 716.7
Samples: 4
Max nTPM: 794.7
Min nTPM: 671.3
RHH5232_R3604
671.3
RHH5204_R3575
794.7
RHH5261_R3633
691.3
RHH5296_R3662
709.3
Vd2 gdTCR nTPM: 650.1
Samples: 4
Max nTPM: 951.1
Min nTPM: 476.5
RHH5234_R3606
578.7
RHH5206_R3577
951.1
RHH5263_R3635
476.5
RHH5298_R3664
594.0
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
