MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.5 nTPM
HPA Brain:80.7 nTPM
GTEx:61.5 nTPM
FANTOM5:167.0 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:34.4 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
2586 Male, age 75, left hemisphere 92.5
2019 Male, age 18, unknown 82.6
2666 Male, age 74, left hemisphere 78.5
1830 Male, age 51, unknown 76.9
2411 Female, age 72, unknown 74.4
2828 Female, age 72, unknown 73.9
1870 Female, age 42, unknown 72.5
1833 Male, age 53, unknown 70.6
1827 Male, age 72, unknown 65.1
2219 Male, age 76, both hemispheres 45.2
Dorsal raphe nucleus
nTPM: 59.5
2750 Male, age 76, both hemispheres 72.1
1828 Male, age 53, unknown 60.5
2016 Female, age 72, unknown 60.1
2047 Male, age 72, unknown 53.8
2298 Female, age 72, unknown 51.0
Inferior colliculus
nTPM: 60.4
1890 Male, age 53, unknown 70.3
1848 Female, age 42, unknown 58.4
2849 Male, age 72, unknown 57.5
2097 Female, age 72, unknown 55.5
Median raphe nucleus
nTPM: 62.0
2220 Male, age 76, midline 62.0
Periaquaductal grey, anterior
nTPM: 65.4
1947 Male, age 18, unknown 72.1
2502 Female, age 75, unknown 66.1
1795 Male, age 51, unknown 57.9
Periaquaductal grey, dorsal
nTPM: 58.6
2850 Male, age 76, both hemispheres 70.1
1831 Male, age 72, unknown 57.4
2464 Female, age 72, unknown 56.5
1840 Male, age 53, unknown 50.4
Periaquaductal grey, lateral
nTPM: 64.1
2140 Male, age 76, both hemispheres 77.5
2272 Male, age 74, both hemispheres 58.3
2053 Male, age 18, unknown 56.6
Pretectal area
nTPM: 64.8
2407 Male, age 75, both hemispheres 79.8
2007 Male, age 72, unknown 75.1
2316 Male, age 76, right hemisphere 75.1
1815 Male, age 53, unknown 71.0
1817 Female, age 42, unknown 70.8
1944 Female, age 72, unknown 60.9
1816 Male, age 51, unknown 59.4
2825 Male, age 18, unknown 59.1
2667 Female, age 75, unknown 58.8
2273 Male, age 74, both hemispheres 54.6
2224 Female, age 72, unknown 48.8
Red nucleus
nTPM: 80.7
2584 Male, age 75, left hemisphere 98.8
2785 Male, age 18, unknown 91.1
1865 Male, age 51, unknown 91.0
1904 Male, age 53, unknown 86.8
2769 Male, age 72, unknown 86.6
2227 Male, age 72, unknown 84.1
2588 Male, age 74, left hemisphere 74.9
1954 Female, age 42, unknown 74.0
2503 Female, age 72, unknown 73.8
1821 Female, age 72, unknown 72.6
2823 Male, age 76, right hemisphere 69.6
2725 Female, age 75, unknown 65.5
Substantia nigra
nTPM: 70.0
2583 Male, age 75, right hemisphere 83.4
2590 Female, age 75, unknown 79.9
2665 Male, age 74, both hemispheres 79.7
1851 Male, age 51, unknown 75.7
1889 Female, age 72, unknown 66.7
1916 Female, age 42, unknown 66.7
2409 Female, age 72, unknown 64.6
2699 Male, age 18, unknown 63.4
1941 Male, age 53, unknown 61.1
2241 Male, age 72, unknown 58.7
Superior colliculus
nTPM: 68.3
1913 Female, age 42, unknown 80.3
1995 Male, age 72, unknown 78.0
2668 Female, age 75, unknown 77.5
2664 Male, age 75, both hemispheres 72.4
1796 Male, age 53, unknown 68.4
2587 Male, age 74, left hemisphere 67.9
1839 Male, age 51, unknown 63.4
2261 Male, age 18, unknown 62.7
2087 Female, age 72, unknown 60.5
1895 Male, age 76, right hemisphere 52.3
Ventral tegmental area
nTPM: 69.1
2410 Female, age 72, unknown 75.2
2223 Female, age 72, unknown 70.9
2218 Male, age 76, both hemispheres 70.8
1942 Male, age 51, unknown 67.9
1915 Female, age 42, unknown 66.0
2021 Male, age 53, unknown 64.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.5
Samples: 139

Max nTPM: 131.5
Min nTPM: 36.3
Std nTPM: 18.1
Median nTPM: 57.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 131.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 121.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 108.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 98.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 97.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 93.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 92.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 91.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 90.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.0
FF:10158-103A5 76 years, female 167.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 24.2
Sample A Female 27.0
Sample B Female 25.0
Sample C Male 24.2
Sample D Male 32.4
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 37.8
Min nTPM: 23.4
Sample A Female 37.8
Sample B Female 25.3
Sample C Male 28.3
Sample D Male 23.4
Periaqueductal gray
nTPM: 20.6
Samples: 3

Max nTPM: 22.3
Min nTPM: 19.2
Sample B Female 22.3
Sample C Male 20.3
Sample D Male 19.2
Superior colliculi
nTPM: 29.2
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.9
Sample A Female 27.9
Sample B Female 29.5
Sample C Male 30.7
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 36.1
Min nTPM: 32.2
Sample A Male 36.1
Sample B Male 32.2
Sample C Female 34.6
Sample D Female 34.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
68844492 Antisense, RP_050222_01_G08, Mouse strain C57BL/6J (56 days, male) 4.8

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