MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:29.7 nTPM
GTEx:10.9 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:14.2 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.3
2666 Male, age 74, left hemisphere 18.2
2411 Female, age 72, unknown 17.8
2219 Male, age 76, both hemispheres 16.2
1827 Male, age 72, unknown 15.1
2019 Male, age 18, unknown 14.1
1830 Male, age 51, unknown 13.3
1870 Female, age 42, unknown 12.9
2586 Male, age 75, left hemisphere 12.6
1833 Male, age 53, unknown 12.5
2828 Female, age 72, unknown 10.3
Dorsal raphe nucleus
nTPM: 21.7
2298 Female, age 72, unknown 28.5
2750 Male, age 76, both hemispheres 26.8
2047 Male, age 72, unknown 22.9
1828 Male, age 53, unknown 17.5
2016 Female, age 72, unknown 13.0
Inferior colliculus
nTPM: 18.6
2097 Female, age 72, unknown 21.7
2849 Male, age 72, unknown 19.9
1848 Female, age 42, unknown 17.8
1890 Male, age 53, unknown 14.9
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Periaquaductal grey, anterior
nTPM: 20.1
1947 Male, age 18, unknown 28.0
2502 Female, age 75, unknown 17.2
1795 Male, age 51, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 15.7
1840 Male, age 53, unknown 19.1
2850 Male, age 76, both hemispheres 19.1
2464 Female, age 72, unknown 14.8
1831 Male, age 72, unknown 9.8
Periaquaductal grey, lateral
nTPM: 14.4
2140 Male, age 76, both hemispheres 16.1
2272 Male, age 74, both hemispheres 15.8
2053 Male, age 18, unknown 11.2
Pretectal area
nTPM: 13.7
2273 Male, age 74, both hemispheres 16.2
2825 Male, age 18, unknown 16.1
2007 Male, age 72, unknown 15.8
2224 Female, age 72, unknown 14.8
2667 Female, age 75, unknown 14.0
1816 Male, age 51, unknown 13.7
1944 Female, age 72, unknown 13.4
2407 Male, age 75, both hemispheres 13.0
1817 Female, age 42, unknown 12.8
2316 Male, age 76, right hemisphere 12.6
1815 Male, age 53, unknown 8.3
Red nucleus
nTPM: 16.4
1821 Female, age 72, unknown 22.0
1954 Female, age 42, unknown 21.1
2769 Male, age 72, unknown 18.9
2227 Male, age 72, unknown 18.7
1865 Male, age 51, unknown 17.2
2823 Male, age 76, right hemisphere 16.8
1904 Male, age 53, unknown 15.2
2503 Female, age 72, unknown 14.7
2725 Female, age 75, unknown 14.3
2785 Male, age 18, unknown 13.6
2588 Male, age 74, left hemisphere 13.0
2584 Male, age 75, left hemisphere 11.5
Substantia nigra
nTPM: 18.0
1941 Male, age 53, unknown 47.9
1916 Female, age 42, unknown 20.9
2241 Male, age 72, unknown 19.6
1851 Male, age 51, unknown 17.8
1889 Female, age 72, unknown 13.8
2590 Female, age 75, unknown 13.3
2409 Female, age 72, unknown 12.9
2665 Male, age 74, both hemispheres 12.7
2699 Male, age 18, unknown 12.2
2583 Male, age 75, right hemisphere 8.4
Superior colliculus
nTPM: 13.5
2668 Female, age 75, unknown 19.3
1839 Male, age 51, unknown 17.6
1895 Male, age 76, right hemisphere 17.4
2664 Male, age 75, both hemispheres 16.2
2261 Male, age 18, unknown 14.6
2587 Male, age 74, left hemisphere 12.8
2087 Female, age 72, unknown 11.5
1796 Male, age 53, unknown 10.3
1995 Male, age 72, unknown 7.9
1913 Female, age 42, unknown 7.2
Ventral tegmental area
nTPM: 14.0
1915 Female, age 42, unknown 16.5
2410 Female, age 72, unknown 14.7
2223 Female, age 72, unknown 14.4
2218 Male, age 76, both hemispheres 14.0
2021 Male, age 53, unknown 12.7
1942 Male, age 51, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 137.2
Min nTPM: 0.8
Std nTPM: 14.6
Median nTPM: 7.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 137.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 72.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 66.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 52.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 29.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 27.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 19.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 18.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 18.3
Min nTPM: 7.3
Sample A Female 17.6
Sample B Female 9.4
Sample C Male 18.3
Sample D Male 7.3
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 12.0
Sample C Male 24.8
Sample D Male 16.5
Periaqueductal gray
nTPM: 12.5
Samples: 3

Max nTPM: 15.3
Min nTPM: 10.9
Sample B Female 10.9
Sample C Male 15.3
Sample D Male 11.3
Superior colliculi
nTPM: 17.4
Samples: 4

Max nTPM: 26.5
Min nTPM: 11.0
Sample A Female 14.7
Sample B Female 11.0
Sample C Male 26.5
Sample D Male 17.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.0
Sample A Male 13.0
Sample B Male 14.8
Sample C Female 15.3
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
70565557 Antisense, RP_050628_01_C03, Mouse strain C57BL/6J (56 days, male) 3.4
71924400 Antisense, RP_050628_01_C03, Mouse strain C57BL/6J (56 days, male) 0.5

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