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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
62.1
nTPM
Monaco:
118.9
nTPM
Schmiedel:
14.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
62.1
HPA sample
nTPM
gdT-cell nTPM: 53.2
Samples: 6
Max nTPM: 75.7
Min nTPM: 21.4
P10809_1007
21.4
P10809_1022
53.6
P10809_1041
61.3
P10809_1060
52.1
P10809_1077
75.7
P10809_1098
55.1
MAIT T-cell nTPM: 14.4
Samples: 6
Max nTPM: 20.3
Min nTPM: 8.7
P10809_1006
8.7
P10809_1024
14.8
P10809_1043
14.8
P10809_1062
16.3
P10809_1083
11.5
P10809_1097
20.3
Memory CD4 T-cell nTPM: 36.3
Samples: 6
Max nTPM: 68.5
Min nTPM: 12.5
P10809_1014
12.5
P10809_1026
29.5
P10809_1045
20.8
P10809_1064
68.5
P10809_1086
58.6
P10809_1113
28.0
Memory CD8 T-cell nTPM: 62.1
Samples: 5
Max nTPM: 82.7
Min nTPM: 29.4
P10809_1012
29.4
P10809_1027
67.7
P10809_1046
61.6
P10809_1065
82.7
P10809_1111
69.2
Naive CD4 T-cell nTPM: 9.9
Samples: 6
Max nTPM: 33.9
Min nTPM: 2.0
P10809_1015
2.0
P10809_1030
3.5
P10809_1049
5.2
P10809_1068
9.5
P10809_1085
33.9
P10809_1112
5.3
Naive CD8 T-cell nTPM: 38.6
Samples: 6
Max nTPM: 82.7
Min nTPM: 7.8
P10809_1016
7.8
P10809_1031
22.0
P10809_1050
27.7
P10809_1069
68.6
P10809_1087
82.7
P10809_1110
22.8
T-reg nTPM: 27.9
Samples: 6
Max nTPM: 36.3
Min nTPM: 20.8
P10809_1018
20.8
P10809_1037
24.4
P10809_1056
23.8
P10809_1075
36.3
P10809_1094
27.2
P10809_1106
34.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
118.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 26.0
Samples: 4
Max nTPM: 50.0
Min nTPM: 8.8
RHH5202_R3573
50.0
RHH5230_R3602
8.8
RHH5259_R3631
21.2
RHH5288_R3660
23.9
Effector memory CD8 T-cell nTPM: 118.9
Samples: 4
Max nTPM: 151.8
Min nTPM: 90.3
RHH5203_R3574
126.2
RHH5231_R3603
90.3
RHH5260_R3632
107.3
RHH5289_R3661
151.8
MAIT T-cell nTPM: 16.6
Samples: 4
Max nTPM: 35.7
Min nTPM: 7.1
RHH5233_R3605
7.1
RHH5205_R3576
35.7
RHH5262_R3634
9.3
RHH5297_R3663
14.3
Memory CD4 T-cell TFH nTPM: 20.0
Samples: 4
Max nTPM: 37.2
Min nTPM: 10.1
RHH5300_R3666
12.5
RHH5236_R3608
10.1
RHH5265_R3637
20.0
RHH5208_R3579
37.2
Memory CD4 T-cell Th1 nTPM: 25.2
Samples: 4
Max nTPM: 35.0
Min nTPM: 13.3
RHH5210_R3581
25.3
RHH5302_R3668
27.3
RHH5238_R3610
13.3
RHH5267_R3639
35.0
Memory CD4 T-cell Th1/Th17 nTPM: 28.0
Samples: 4
Max nTPM: 53.6
Min nTPM: 6.2
RHH5303_R3669
24.9
RHH5211_R3582
53.6
RHH5239_R3611
6.2
RHH5268_R3640
27.2
Memory CD4 T-cell Th17 nTPM: 28.4
Samples: 4
Max nTPM: 45.6
Min nTPM: 21.5
RHH5304_R3670
21.5
RHH5212_R3583
45.6
RHH5240_R3612
23.4
RHH5269_R3641
22.9
Memory CD4 T-cell Th2 nTPM: 25.6
Samples: 4
Max nTPM: 53.4
Min nTPM: 8.5
RHH5305_R3671
19.9
RHH5213_R3584
53.4
RHH5241_R3613
8.5
RHH5270_R3642
20.5
Naive CD4 T-cell nTPM: 6.1
Samples: 4
Max nTPM: 12.0
Min nTPM: 2.5
RHH5306_R3672
3.7
RHH5214_R3585
12.0
RHH5242_R3614
2.5
RHH5271_R3643
6.2
Naive CD8 T-cell nTPM: 3.0
Samples: 4
Max nTPM: 3.8
Min nTPM: 2.2
RHH5201_R3572
3.1
RHH5229_R3601
3.0
RHH5258_R3630
3.8
RHH5287_R3659
2.2
Non-Vd2 gdTCR nTPM: 76.9
Samples: 4
Max nTPM: 123.4
Min nTPM: 51.7
RHH5235_R3607
51.7
RHH5264_R3636
62.6
RHH5207_R3578
123.4
RHH5299_R3665
70.0
T-reg nTPM: 23.1
Samples: 4
Max nTPM: 34.9
Min nTPM: 15.2
RHH5301_R3667
22.7
RHH5237_R3609
15.2
RHH5266_R3638
19.5
RHH5209_R3580
34.9
Terminal effector memory CD4 T-cell nTPM: 101.4
Samples: 2
Max nTPM: 105.9
Min nTPM: 96.8
RHH5243_R3615
105.9
RHH5272_R3644
96.8
Terminal effector memory CD8 T-cell nTPM: 102.5
Samples: 4
Max nTPM: 132.5
Min nTPM: 77.0
RHH5232_R3604
77.0
RHH5204_R3575
82.2
RHH5261_R3633
132.5
RHH5296_R3662
118.2
Vd2 gdTCR nTPM: 52.9
Samples: 4
Max nTPM: 97.3
Min nTPM: 30.7
RHH5234_R3606
37.8
RHH5206_R3577
97.3
RHH5263_R3635
45.6
RHH5298_R3664
30.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
