MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA Brain:98.2 nTPM
GTEx:32.7 nTPM
FANTOM5:236.7 Scaled Tags Per Million
Pig:83.4 nTPM
Mouse:32.4 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2666 Male, age 74, left hemisphere 99.0
2219 Male, age 76, both hemispheres 98.4
1827 Male, age 72, unknown 95.4
2411 Female, age 72, unknown 94.3
2586 Male, age 75, left hemisphere 88.8
2019 Male, age 18, unknown 88.1
1833 Male, age 53, unknown 85.9
1870 Female, age 42, unknown 85.5
1830 Male, age 51, unknown 81.2
2828 Female, age 72, unknown 80.8
Dorsal raphe nucleus
nTPM: 79.2
2750 Male, age 76, both hemispheres 86.3
2047 Male, age 72, unknown 80.0
1828 Male, age 53, unknown 78.6
2298 Female, age 72, unknown 78.3
2016 Female, age 72, unknown 72.8
Inferior colliculus
nTPM: 80.0
2097 Female, age 72, unknown 83.4
2849 Male, age 72, unknown 81.2
1890 Male, age 53, unknown 77.8
1848 Female, age 42, unknown 77.6
Median raphe nucleus
nTPM: 89.6
2220 Male, age 76, midline 89.6
Periaquaductal grey, anterior
nTPM: 88.8
2502 Female, age 75, unknown 95.7
1947 Male, age 18, unknown 92.1
1795 Male, age 51, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 75.1
1840 Male, age 53, unknown 80.7
1831 Male, age 72, unknown 77.8
2464 Female, age 72, unknown 74.8
2850 Male, age 76, both hemispheres 67.2
Periaquaductal grey, lateral
nTPM: 68.4
2053 Male, age 18, unknown 75.7
2272 Male, age 74, both hemispheres 66.4
2140 Male, age 76, both hemispheres 63.1
Pretectal area
nTPM: 91.3
1816 Male, age 51, unknown 113.8
2007 Male, age 72, unknown 106.6
1815 Male, age 53, unknown 106.2
1817 Female, age 42, unknown 105.4
1944 Female, age 72, unknown 101.2
2407 Male, age 75, both hemispheres 87.6
2667 Female, age 75, unknown 84.1
2825 Male, age 18, unknown 77.4
2224 Female, age 72, unknown 77.1
2316 Male, age 76, right hemisphere 75.5
2273 Male, age 74, both hemispheres 69.6
Red nucleus
nTPM: 89.9
1821 Female, age 72, unknown 105.0
2588 Male, age 74, left hemisphere 99.6
2725 Female, age 75, unknown 97.8
2503 Female, age 72, unknown 97.2
2785 Male, age 18, unknown 90.7
1904 Male, age 53, unknown 89.9
2584 Male, age 75, left hemisphere 88.7
1865 Male, age 51, unknown 87.5
1954 Female, age 42, unknown 87.2
2823 Male, age 76, right hemisphere 81.3
2769 Male, age 72, unknown 77.3
2227 Male, age 72, unknown 76.6
Substantia nigra
nTPM: 98.2
1916 Female, age 42, unknown 123.8
2241 Male, age 72, unknown 111.1
1851 Male, age 51, unknown 110.0
1941 Male, age 53, unknown 103.6
2409 Female, age 72, unknown 102.0
1889 Female, age 72, unknown 97.9
2699 Male, age 18, unknown 94.9
2590 Female, age 75, unknown 80.6
2583 Male, age 75, right hemisphere 80.1
2665 Male, age 74, both hemispheres 77.5
Superior colliculus
nTPM: 87.5
2668 Female, age 75, unknown 95.2
1895 Male, age 76, right hemisphere 94.8
2587 Male, age 74, left hemisphere 91.8
2087 Female, age 72, unknown 90.8
2261 Male, age 18, unknown 90.2
1796 Male, age 53, unknown 87.1
1913 Female, age 42, unknown 86.7
1839 Male, age 51, unknown 82.1
2664 Male, age 75, both hemispheres 79.9
1995 Male, age 72, unknown 76.7
Ventral tegmental area
nTPM: 92.3
2218 Male, age 76, both hemispheres 109.6
2410 Female, age 72, unknown 108.9
1915 Female, age 42, unknown 95.4
1942 Male, age 51, unknown 86.3
2223 Female, age 72, unknown 81.2
2021 Male, age 53, unknown 72.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 75.0
Min nTPM: 13.3
Std nTPM: 11.7
Median nTPM: 29.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 75.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 68.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 58.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 58.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 56.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 55.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 52.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 51.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 50.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 236.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 236.7
FF:10158-103A5 76 years, female 236.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.4
Samples: 4

Max nTPM: 89.3
Min nTPM: 57.5
Sample A Female 89.3
Sample B Female 58.8
Sample C Male 80.1
Sample D Male 57.5
Midbrain
nTPM: 83.5
Samples: 4

Max nTPM: 113.2
Min nTPM: 71.1
Sample A Female 76.4
Sample B Female 71.1
Sample C Male 113.2
Sample D Male 73.1
Periaqueductal gray
nTPM: 63.7
Samples: 3

Max nTPM: 68.8
Min nTPM: 56.5
Sample B Female 65.7
Sample C Male 68.8
Sample D Male 56.5
Superior colliculi
nTPM: 75.2
Samples: 4

Max nTPM: 98.0
Min nTPM: 52.3
Sample A Female 75.1
Sample B Female 52.3
Sample C Male 98.0
Sample D Male 75.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 28.9
Sample A Male 28.9
Sample B Male 33.2
Sample C Female 35.1
Sample D Female 32.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
634451 Antisense, RP_040914_01_A01, Mouse strain C57BL/6J (56 days, male) 2.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org