MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA Brain:45.5 nTPM
GTEx:13.5 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:23.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.5
2666 Male, age 74, left hemisphere 51.1
2586 Male, age 75, left hemisphere 51.0
1833 Male, age 53, unknown 50.6
1830 Male, age 51, unknown 47.6
1827 Male, age 72, unknown 44.6
2219 Male, age 76, both hemispheres 44.4
2019 Male, age 18, unknown 44.1
2828 Female, age 72, unknown 42.9
1870 Female, age 42, unknown 39.9
2411 Female, age 72, unknown 38.7
Dorsal raphe nucleus
nTPM: 38.3
2016 Female, age 72, unknown 44.6
1828 Male, age 53, unknown 41.9
2750 Male, age 76, both hemispheres 39.7
2298 Female, age 72, unknown 36.4
2047 Male, age 72, unknown 29.0
Inferior colliculus
nTPM: 41.5
2849 Male, age 72, unknown 49.9
1848 Female, age 42, unknown 44.3
1890 Male, age 53, unknown 38.9
2097 Female, age 72, unknown 32.7
Median raphe nucleus
nTPM: 40.9
2220 Male, age 76, midline 40.9
Periaquaductal grey, anterior
nTPM: 40.6
2502 Female, age 75, unknown 50.6
1795 Male, age 51, unknown 36.9
1947 Male, age 18, unknown 34.2
Periaquaductal grey, dorsal
nTPM: 41.2
2464 Female, age 72, unknown 44.6
1840 Male, age 53, unknown 40.8
2850 Male, age 76, both hemispheres 40.6
1831 Male, age 72, unknown 39.0
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 41.1
2053 Male, age 18, unknown 39.3
2272 Male, age 74, both hemispheres 35.8
Pretectal area
nTPM: 41.2
1817 Female, age 42, unknown 47.8
2316 Male, age 76, right hemisphere 45.6
1815 Male, age 53, unknown 43.8
2007 Male, age 72, unknown 42.8
2407 Male, age 75, both hemispheres 42.7
1816 Male, age 51, unknown 42.4
2825 Male, age 18, unknown 42.3
1944 Female, age 72, unknown 38.6
2667 Female, age 75, unknown 38.2
2224 Female, age 72, unknown 37.6
2273 Male, age 74, both hemispheres 32.0
Red nucleus
nTPM: 45.3
2588 Male, age 74, left hemisphere 57.8
2503 Female, age 72, unknown 51.9
2725 Female, age 75, unknown 46.7
2227 Male, age 72, unknown 46.2
1904 Male, age 53, unknown 45.7
2584 Male, age 75, left hemisphere 44.2
1865 Male, age 51, unknown 43.3
1954 Female, age 42, unknown 42.6
2785 Male, age 18, unknown 42.3
2769 Male, age 72, unknown 42.1
2823 Male, age 76, right hemisphere 40.9
1821 Female, age 72, unknown 39.8
Substantia nigra
nTPM: 42.3
2699 Male, age 18, unknown 53.4
2665 Male, age 74, both hemispheres 49.3
1889 Female, age 72, unknown 45.5
1851 Male, age 51, unknown 45.4
2409 Female, age 72, unknown 44.3
2583 Male, age 75, right hemisphere 40.1
1916 Female, age 42, unknown 40.0
2241 Male, age 72, unknown 37.6
2590 Female, age 75, unknown 35.5
1941 Male, age 53, unknown 32.3
Superior colliculus
nTPM: 42.5
1995 Male, age 72, unknown 54.1
2587 Male, age 74, left hemisphere 44.6
1913 Female, age 42, unknown 44.1
1796 Male, age 53, unknown 44.0
1839 Male, age 51, unknown 41.6
2668 Female, age 75, unknown 40.8
2664 Male, age 75, both hemispheres 40.6
2261 Male, age 18, unknown 40.4
1895 Male, age 76, right hemisphere 38.0
2087 Female, age 72, unknown 36.4
Ventral tegmental area
nTPM: 40.8
2410 Female, age 72, unknown 45.8
1915 Female, age 42, unknown 43.8
2021 Male, age 53, unknown 40.5
1942 Male, age 51, unknown 39.5
2223 Female, age 72, unknown 37.8
2218 Male, age 76, both hemispheres 37.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.5
Samples: 139

Max nTPM: 28.2
Min nTPM: 5.2
Std nTPM: 4.3
Median nTPM: 12.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 28.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 28.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 27.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 22.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 22.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 22.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 21.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 21.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.1
FF:10158-103A5 76 years, female 42.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 41.2
Min nTPM: 36.4
Sample A Female 37.9
Sample B Female 36.4
Sample C Male 36.9
Sample D Male 41.2
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 40.4
Min nTPM: 27.8
Sample A Female 40.4
Sample B Female 40.1
Sample C Male 27.8
Sample D Male 29.1
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 36.2
Min nTPM: 34.5
Sample B Female 36.2
Sample C Male 34.5
Sample D Male 35.2
Superior colliculi
nTPM: 32.7
Samples: 4

Max nTPM: 37.8
Min nTPM: 23.8
Sample A Female 37.0
Sample B Female 23.8
Sample C Male 32.1
Sample D Male 37.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 19.3
Sample A Male 19.3
Sample B Male 19.6
Sample C Female 26.7
Sample D Female 28.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71307190 Antisense, RP_050825_01_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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