MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:189.4 nTPM
GTEx:46.7 nTPM
FANTOM5:400.6 Scaled Tags Per Million
Pig:95.1 nTPM
Mouse:51.3 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 189.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 154.3
1830 Male, age 51, unknown 187.0
1833 Male, age 53, unknown 181.4
1870 Female, age 42, unknown 170.2
2411 Female, age 72, unknown 153.2
2666 Male, age 74, left hemisphere 152.3
2019 Male, age 18, unknown 148.9
2586 Male, age 75, left hemisphere 147.0
2828 Female, age 72, unknown 140.8
2219 Male, age 76, both hemispheres 140.0
1827 Male, age 72, unknown 122.5
Dorsal raphe nucleus
nTPM: 107.1
2750 Male, age 76, both hemispheres 165.4
2016 Female, age 72, unknown 114.1
1828 Male, age 53, unknown 109.9
2047 Male, age 72, unknown 81.2
2298 Female, age 72, unknown 65.0
Inferior colliculus
nTPM: 112.8
2849 Male, age 72, unknown 133.1
1848 Female, age 42, unknown 113.9
1890 Male, age 53, unknown 112.9
2097 Female, age 72, unknown 91.2
Median raphe nucleus
nTPM: 111.6
2220 Male, age 76, midline 111.6
Periaquaductal grey, anterior
nTPM: 94.5
2502 Female, age 75, unknown 107.3
1947 Male, age 18, unknown 90.7
1795 Male, age 51, unknown 85.5
Periaquaductal grey, dorsal
nTPM: 97.2
2464 Female, age 72, unknown 118.9
1831 Male, age 72, unknown 110.1
2850 Male, age 76, both hemispheres 92.6
1840 Male, age 53, unknown 67.2
Periaquaductal grey, lateral
nTPM: 92.9
2053 Male, age 18, unknown 104.7
2272 Male, age 74, both hemispheres 89.9
2140 Male, age 76, both hemispheres 84.0
Pretectal area
nTPM: 108.5
2407 Male, age 75, both hemispheres 146.8
1815 Male, age 53, unknown 136.6
2316 Male, age 76, right hemisphere 129.0
2825 Male, age 18, unknown 114.5
1817 Female, age 42, unknown 109.4
2667 Female, age 75, unknown 108.8
2007 Male, age 72, unknown 101.6
2224 Female, age 72, unknown 88.0
2273 Male, age 74, both hemispheres 87.9
1944 Female, age 72, unknown 85.7
1816 Male, age 51, unknown 85.5
Red nucleus
nTPM: 189.4
1865 Male, age 51, unknown 219.4
2503 Female, age 72, unknown 208.8
1904 Male, age 53, unknown 204.5
2227 Male, age 72, unknown 197.0
2769 Male, age 72, unknown 195.1
2823 Male, age 76, right hemisphere 194.1
1821 Female, age 72, unknown 191.0
2785 Male, age 18, unknown 182.7
1954 Female, age 42, unknown 178.9
2588 Male, age 74, left hemisphere 172.9
2725 Female, age 75, unknown 172.8
2584 Male, age 75, left hemisphere 156.2
Substantia nigra
nTPM: 112.7
2699 Male, age 18, unknown 142.7
2583 Male, age 75, right hemisphere 134.7
2409 Female, age 72, unknown 125.5
1889 Female, age 72, unknown 118.3
1851 Male, age 51, unknown 117.5
2590 Female, age 75, unknown 111.9
1941 Male, age 53, unknown 104.6
2665 Male, age 74, both hemispheres 97.6
2241 Male, age 72, unknown 89.5
1916 Female, age 42, unknown 84.4
Superior colliculus
nTPM: 132.1
1913 Female, age 42, unknown 197.1
1995 Male, age 72, unknown 176.3
2587 Male, age 74, left hemisphere 143.9
1839 Male, age 51, unknown 134.2
1895 Male, age 76, right hemisphere 134.2
2668 Female, age 75, unknown 119.9
2664 Male, age 75, both hemispheres 116.2
1796 Male, age 53, unknown 111.4
2087 Female, age 72, unknown 96.9
2261 Male, age 18, unknown 90.8
Ventral tegmental area
nTPM: 123.4
2223 Female, age 72, unknown 170.8
2410 Female, age 72, unknown 128.5
2021 Male, age 53, unknown 117.5
2218 Male, age 76, both hemispheres 115.8
1942 Male, age 51, unknown 106.4
1915 Female, age 42, unknown 101.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 139

Max nTPM: 120.4
Min nTPM: 16.3
Std nTPM: 20.2
Median nTPM: 41.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 120.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 109.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 109.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 89.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 87.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 86.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 85.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 85.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 85.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 400.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 400.6
FF:10158-103A5 76 years, female 400.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.2
Samples: 4

Max nTPM: 149.8
Min nTPM: 53.4
Sample A Female 61.2
Sample B Female 53.4
Sample C Male 76.2
Sample D Male 149.8
Midbrain
nTPM: 95.1
Samples: 4

Max nTPM: 162.0
Min nTPM: 63.8
Sample A Female 162.0
Sample B Female 75.9
Sample C Male 63.8
Sample D Male 78.6
Periaqueductal gray
nTPM: 62.6
Samples: 3

Max nTPM: 68.8
Min nTPM: 52.4
Sample B Female 66.7
Sample C Male 52.4
Sample D Male 68.8
Superior colliculi
nTPM: 85.5
Samples: 4

Max nTPM: 98.1
Min nTPM: 72.0
Sample A Female 72.0
Sample B Female 98.1
Sample C Male 79.9
Sample D Male 92.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.3
Samples: 4

Max nTPM: 62.8
Min nTPM: 42.2
Sample A Male 42.2
Sample B Male 48.0
Sample C Female 62.8
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
69013278 Antisense, RP_050309_02_B10, Mouse strain C57BL/6J (56 days, male) 8.0

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