HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:16.3 nTPM
GTEx:12.9 nTPM
FANTOM5:34.7 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:4.4 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030175Antibody HPA030176Antibody HPA030178
Glial cells LowLowNot detected
Neuronal cells MediumNot detectedNot detected







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Hippocampus
nTPM: 12.8
2621 Female, age 67, right hemisphere 14.8
1855 Male, age 76, left hemisphere 13.8
1911 Female, age 85, right hemisphere 13.7
2529 Female, age 94, left hemisphere 12.5
1898 Male, age 80, left hemisphere 11.3
2148 Female, age 91, left hemisphere 10.9
Dentate gyrus
nTPM: 11.4
2530 Female, age 94, left hemisphere 12.7
2010 Male, age 76, both hemispheres 12.5
2246 Female, age 85, both hemispheres 11.8
1927 Female, age 91, both hemispheres 11.0
2528 Male, age 74, both hemispheres 10.5
2531 Female, age 67, both hemispheres 10.1
Entorhinal gyrus
nTPM: 16.3
2613 Female, age 94, left hemisphere 18.9
1787 Male, age 76, left hemisphere 18.6
2764 Male, age 80, right hemisphere 18.4
2117 Female, age 91, right hemisphere 15.9
2686 Male, age 75, right hemisphere 14.1
1938 Female, age 85, left hemisphere 11.7
Hippocampus, CA1
nTPM: 11.2
2082 Female, age 91, right hemisphere 15.6
2749 Male, age 80, left hemisphere 12.2
2527 Male, age 74, both hemispheres 10.6
2045 Male, age 76, both hemispheres 9.4
1873 Female, age 85, both hemispheres 8.0
Hippocampus, CA2
nTPM: 13.8
1940 Female, age 85, left hemisphere 17.7
2437 Female, age 94, left hemisphere 15.9
2113 Female, age 91, right hemisphere 14.8
1892 Male, age 76, both hemispheres 11.9
2249 Male, age 74, both hemispheres 11.4
1963 Male, age 80, left hemisphere 11.2
Hippocampus, CA3
nTPM: 10.8
1867 Male, age 76, both hemispheres 14.2
2137 Male, age 80, left hemisphere 12.6
1891 Female, age 85, both hemispheres 11.3
2861 Female, age 67, both hemispheres 10.2
2436 Male, age 74, both hemispheres 9.7
2620 Female, age 94, left hemisphere 6.8
Parahippocampal cortex
nTPM: 15.8
2622 Female, age 67, right hemisphere 21.0
2250 Female, age 67, right hemisphere 17.9
2245 Female, age 91, both hemispheres 17.5
1990 Female, age 91, right hemisphere 17.4
2532 Female, age 72, left hemisphere 16.6
2693 Female, age 94, both hemispheres 16.3
2018 Male, age 76, both hemispheres 15.7
2692 Male, age 74, both hemispheres 11.8
1850 Male, age 80, both hemispheres 11.7
1933 Female, age 85, both hemispheres 11.7
Perirhinal gyrus
nTPM: 13.5
2521 Female, age 94, right hemisphere 16.5
2848 Male, age 76, right hemisphere 16.1
1794 Male, age 80, right hemisphere 12.6
1847 Female, age 91, left hemisphere 11.5
1841 Female, age 85, right hemisphere 10.8
Subiculum
nTPM: 14.1
2042 Male, age 76, both hemispheres 17.2
2438 Female, age 94, left hemisphere 15.1
2619 Male, age 74, both hemispheres 14.8
2729 Female, age 91, right hemisphere 14.1
1977 Female, age 85, both hemispheres 11.8
1901 Male, age 80, both hemispheres 11.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.9
Samples: 197

Max nTPM: 34.3
Min nTPM: 2.9
Std nTPM: 5.2
Median nTPM: 12.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 34.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 33.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 32.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 29.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 26.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 25.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 24.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 23.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 23.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 23.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 21.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 34.7
FF:10153-102I9 76 years, female 48.7
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Subiculum
nTPM: 1.8
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.1
Sample A Female 2.0
Sample B Female 1.1
Sample C Male 2.0
Sample D Male 2.1
Dorsal hippocampus
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.3
Sample A Female 2.4
Sample B Female 1.7
Sample C Male 2.3
Sample D Male 1.3
Entorhinal cortex
nTPM: 2.3
Samples: 4

Max nTPM: 2.4
Min nTPM: 2.0
Sample A Female 2.4
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 2.3
Ventral hippocampus
nTPM: 2.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.4
Sample C Male 2.2
Sample D Male 3.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.4
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.5
Sample A Male 5.2
Sample B Male 4.6
Sample C Female 4.3
Sample D Female 3.5
Hippocampal formation
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.9
Sample A Male 4.2
Sample B Male 4.3
Sample C Female 2.9
Sample D Female 4.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
68443435 Antisense, RP_050111_02_A03, Mouse strain C57BL/6J (56 days, male) 0.6

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