MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.0 nTPM
HPA Brain:91.5 nTPM
GTEx:97.0 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:123.5 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.5
2411 Female, age 72, unknown 89.4
2019 Male, age 18, unknown 84.6
1870 Female, age 42, unknown 83.5
2219 Male, age 76, both hemispheres 83.0
1827 Male, age 72, unknown 81.9
1833 Male, age 53, unknown 75.9
2828 Female, age 72, unknown 71.8
1830 Male, age 51, unknown 70.8
2666 Male, age 74, left hemisphere 68.3
2586 Male, age 75, left hemisphere 66.2
Dorsal raphe nucleus
nTPM: 86.2
2298 Female, age 72, unknown 107.7
2047 Male, age 72, unknown 87.4
2750 Male, age 76, both hemispheres 83.5
1828 Male, age 53, unknown 77.7
2016 Female, age 72, unknown 74.5
Inferior colliculus
nTPM: 76.9
1848 Female, age 42, unknown 79.3
2097 Female, age 72, unknown 78.7
1890 Male, age 53, unknown 75.3
2849 Male, age 72, unknown 74.2
Median raphe nucleus
nTPM: 82.9
2220 Male, age 76, midline 82.9
Periaquaductal grey, anterior
nTPM: 76.1
2502 Female, age 75, unknown 79.1
1795 Male, age 51, unknown 75.0
1947 Male, age 18, unknown 74.2
Periaquaductal grey, dorsal
nTPM: 75.5
1840 Male, age 53, unknown 84.7
2850 Male, age 76, both hemispheres 77.1
1831 Male, age 72, unknown 70.1
2464 Female, age 72, unknown 70.1
Periaquaductal grey, lateral
nTPM: 75.8
2272 Male, age 74, both hemispheres 83.7
2053 Male, age 18, unknown 73.4
2140 Male, age 76, both hemispheres 70.3
Pretectal area
nTPM: 82.0
2007 Male, age 72, unknown 93.3
1817 Female, age 42, unknown 91.7
1816 Male, age 51, unknown 91.6
2273 Male, age 74, both hemispheres 89.2
1944 Female, age 72, unknown 85.6
2224 Female, age 72, unknown 84.6
1815 Male, age 53, unknown 83.2
2667 Female, age 75, unknown 79.9
2825 Male, age 18, unknown 73.6
2316 Male, age 76, right hemisphere 66.2
2407 Male, age 75, both hemispheres 63.2
Red nucleus
nTPM: 77.8
1821 Female, age 72, unknown 98.5
2725 Female, age 75, unknown 89.2
2785 Male, age 18, unknown 81.6
2503 Female, age 72, unknown 80.1
1954 Female, age 42, unknown 78.4
1904 Male, age 53, unknown 77.9
2769 Male, age 72, unknown 75.2
2588 Male, age 74, left hemisphere 74.8
1865 Male, age 51, unknown 74.4
2227 Male, age 72, unknown 73.2
2823 Male, age 76, right hemisphere 72.3
2584 Male, age 75, left hemisphere 58.7
Substantia nigra
nTPM: 91.5
1916 Female, age 42, unknown 119.1
1851 Male, age 51, unknown 101.3
1889 Female, age 72, unknown 96.4
2241 Male, age 72, unknown 95.9
2409 Female, age 72, unknown 93.7
1941 Male, age 53, unknown 93.5
2699 Male, age 18, unknown 83.5
2665 Male, age 74, both hemispheres 83.0
2590 Female, age 75, unknown 79.3
2583 Male, age 75, right hemisphere 69.0
Superior colliculus
nTPM: 74.1
2587 Male, age 74, left hemisphere 86.8
1796 Male, age 53, unknown 84.1
2261 Male, age 18, unknown 80.4
1895 Male, age 76, right hemisphere 79.4
1839 Male, age 51, unknown 76.6
2087 Female, age 72, unknown 74.0
2668 Female, age 75, unknown 71.1
1913 Female, age 42, unknown 70.2
1995 Male, age 72, unknown 67.2
2664 Male, age 75, both hemispheres 51.0
Ventral tegmental area
nTPM: 83.5
2410 Female, age 72, unknown 98.8
1915 Female, age 42, unknown 97.6
2218 Male, age 76, both hemispheres 86.3
2223 Female, age 72, unknown 77.3
1942 Male, age 51, unknown 72.2
2021 Male, age 53, unknown 68.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.0
Samples: 139

Max nTPM: 150.8
Min nTPM: 63.4
Std nTPM: 18.6
Median nTPM: 93.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 150.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 149.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 148.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 146.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 142.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 142.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 137.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 137.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 135.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 131.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.0
Samples: 4

Max nTPM: 89.2
Min nTPM: 58.0
Sample A Female 89.2
Sample B Female 58.7
Sample C Male 74.0
Sample D Male 58.0
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 91.6
Min nTPM: 62.2
Sample A Female 91.6
Sample B Female 66.2
Sample C Male 69.3
Sample D Male 62.2
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 68.2
Min nTPM: 53.1
Sample B Female 56.8
Sample C Male 68.2
Sample D Male 53.1
Superior colliculi
nTPM: 71.3
Samples: 4

Max nTPM: 78.5
Min nTPM: 65.9
Sample A Female 78.5
Sample B Female 69.3
Sample C Male 71.6
Sample D Male 65.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.5
Samples: 4

Max nTPM: 148.1
Min nTPM: 105.7
Sample A Male 148.1
Sample B Male 127.0
Sample C Female 113.1
Sample D Female 105.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
81600108 Antisense, RP_080205_02_D01, Mouse strain C57BL/6J (56 days, male) 17.3
413791 Antisense, RP_040809_01_E01, Mouse strain C57BL/6J (56 days, male) 14.2

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