MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.6 nTPM
HPA Brain:18.7 nTPM
GTEx:3.6 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:4.0 nTPM
Mouse:0.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2219 Male, age 76, both hemispheres 20.3
2411 Female, age 72, unknown 19.7
1833 Male, age 53, unknown 19.1
2019 Male, age 18, unknown 18.9
2586 Male, age 75, left hemisphere 18.4
1830 Male, age 51, unknown 17.8
1870 Female, age 42, unknown 16.8
1827 Male, age 72, unknown 16.3
2828 Female, age 72, unknown 16.3
2666 Male, age 74, left hemisphere 15.6
Dorsal raphe nucleus
nTPM: 15.6
2750 Male, age 76, both hemispheres 18.9
2047 Male, age 72, unknown 15.8
2298 Female, age 72, unknown 15.5
1828 Male, age 53, unknown 13.9
2016 Female, age 72, unknown 13.9
Inferior colliculus
nTPM: 13.9
2097 Female, age 72, unknown 14.9
2849 Male, age 72, unknown 14.0
1890 Male, age 53, unknown 13.7
1848 Female, age 42, unknown 12.9
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Periaquaductal grey, anterior
nTPM: 15.7
1795 Male, age 51, unknown 16.5
1947 Male, age 18, unknown 15.6
2502 Female, age 75, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 13.9
2464 Female, age 72, unknown 17.2
1831 Male, age 72, unknown 13.8
1840 Male, age 53, unknown 12.4
2850 Male, age 76, both hemispheres 12.0
Periaquaductal grey, lateral
nTPM: 15.8
2272 Male, age 74, both hemispheres 18.0
2053 Male, age 18, unknown 16.1
2140 Male, age 76, both hemispheres 13.5
Pretectal area
nTPM: 16.1
2407 Male, age 75, both hemispheres 18.9
2316 Male, age 76, right hemisphere 18.0
2825 Male, age 18, unknown 17.8
2667 Female, age 75, unknown 17.3
2007 Male, age 72, unknown 16.5
1815 Male, age 53, unknown 16.0
2224 Female, age 72, unknown 15.4
1816 Male, age 51, unknown 15.1
1817 Female, age 42, unknown 14.2
2273 Male, age 74, both hemispheres 14.0
1944 Female, age 72, unknown 13.8
Red nucleus
nTPM: 18.7
2769 Male, age 72, unknown 21.5
2584 Male, age 75, left hemisphere 20.8
2823 Male, age 76, right hemisphere 20.2
1865 Male, age 51, unknown 19.5
1904 Male, age 53, unknown 19.2
2227 Male, age 72, unknown 19.0
2785 Male, age 18, unknown 18.3
2588 Male, age 74, left hemisphere 17.6
2503 Female, age 72, unknown 17.3
1821 Female, age 72, unknown 17.0
2725 Female, age 75, unknown 17.0
1954 Female, age 42, unknown 16.6
Substantia nigra
nTPM: 14.4
2583 Male, age 75, right hemisphere 17.7
2665 Male, age 74, both hemispheres 16.1
2590 Female, age 75, unknown 15.4
1941 Male, age 53, unknown 14.6
1851 Male, age 51, unknown 14.3
1889 Female, age 72, unknown 14.1
2409 Female, age 72, unknown 13.7
2699 Male, age 18, unknown 13.3
1916 Female, age 42, unknown 12.6
2241 Male, age 72, unknown 12.5
Superior colliculus
nTPM: 15.8
1913 Female, age 42, unknown 19.0
2664 Male, age 75, both hemispheres 17.1
1839 Male, age 51, unknown 16.5
1995 Male, age 72, unknown 15.6
1796 Male, age 53, unknown 15.5
2668 Female, age 75, unknown 15.5
1895 Male, age 76, right hemisphere 15.0
2087 Female, age 72, unknown 15.0
2587 Male, age 74, left hemisphere 14.6
2261 Male, age 18, unknown 14.5
Ventral tegmental area
nTPM: 16.1
2223 Female, age 72, unknown 18.5
2021 Male, age 53, unknown 18.0
2410 Female, age 72, unknown 16.4
1942 Male, age 51, unknown 15.0
2218 Male, age 76, both hemispheres 14.4
1915 Female, age 42, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.6
Samples: 139

Max nTPM: 11.0
Min nTPM: 1.2
Std nTPM: 1.6
Median nTPM: 3.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 9.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 8.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 8.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 7.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 6.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 5.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 5.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 3.7
Sample C Male 3.2
Sample D Male 4.9
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.0
Sample A Female 3.1
Sample B Female 3.7
Sample C Male 3.0
Sample D Male 3.8
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 4.3
Min nTPM: 3.6
Sample B Female 4.1
Sample C Male 3.6
Sample D Male 4.3
Superior colliculi
nTPM: 2.9
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 3.2
Sample C Male 2.8
Sample D Male 3.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.3
Sample C Female 0.0
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68498926 Antisense, RP_050113_02_F04, Mouse strain C57BL/6J (56 days, male) 0.0

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