MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA Brain:26.7 nTPM
GTEx:0.9 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:6.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
1833 Male, age 53, unknown 25.6
1830 Male, age 51, unknown 24.8
2219 Male, age 76, both hemispheres 23.7
2411 Female, age 72, unknown 23.7
2019 Male, age 18, unknown 22.7
1870 Female, age 42, unknown 22.6
2828 Female, age 72, unknown 22.2
2666 Male, age 74, left hemisphere 21.7
1827 Male, age 72, unknown 21.3
2586 Male, age 75, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 22.1
2016 Female, age 72, unknown 24.6
2750 Male, age 76, both hemispheres 24.0
1828 Male, age 53, unknown 21.2
2047 Male, age 72, unknown 21.0
2298 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 22.4
2849 Male, age 72, unknown 23.6
1890 Male, age 53, unknown 22.7
1848 Female, age 42, unknown 22.0
2097 Female, age 72, unknown 21.2
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 21.3
1947 Male, age 18, unknown 22.6
2502 Female, age 75, unknown 20.8
1795 Male, age 51, unknown 20.5
Periaquaductal grey, dorsal
nTPM: 22.6
1831 Male, age 72, unknown 23.8
2464 Female, age 72, unknown 23.0
1840 Male, age 53, unknown 21.8
2850 Male, age 76, both hemispheres 21.8
Periaquaductal grey, lateral
nTPM: 23.4
2140 Male, age 76, both hemispheres 24.6
2053 Male, age 18, unknown 24.2
2272 Male, age 74, both hemispheres 21.4
Pretectal area
nTPM: 21.9
2316 Male, age 76, right hemisphere 24.5
2407 Male, age 75, both hemispheres 24.0
2273 Male, age 74, both hemispheres 23.6
1944 Female, age 72, unknown 22.8
2667 Female, age 75, unknown 22.6
2825 Male, age 18, unknown 22.6
2224 Female, age 72, unknown 21.6
2007 Male, age 72, unknown 20.6
1815 Male, age 53, unknown 20.0
1817 Female, age 42, unknown 19.3
1816 Male, age 51, unknown 18.9
Red nucleus
nTPM: 23.9
1904 Male, age 53, unknown 26.4
1865 Male, age 51, unknown 26.0
2503 Female, age 72, unknown 25.4
2823 Male, age 76, right hemisphere 25.3
1954 Female, age 42, unknown 24.5
2584 Male, age 75, left hemisphere 23.8
2227 Male, age 72, unknown 23.4
1821 Female, age 72, unknown 23.1
2769 Male, age 72, unknown 22.7
2725 Female, age 75, unknown 22.5
2588 Male, age 74, left hemisphere 22.3
2785 Male, age 18, unknown 21.2
Substantia nigra
nTPM: 22.9
2590 Female, age 75, unknown 25.0
2241 Male, age 72, unknown 24.6
2583 Male, age 75, right hemisphere 24.4
2699 Male, age 18, unknown 23.7
1941 Male, age 53, unknown 22.6
1851 Male, age 51, unknown 22.4
2665 Male, age 74, both hemispheres 22.4
2409 Female, age 72, unknown 22.1
1889 Female, age 72, unknown 20.9
1916 Female, age 42, unknown 20.7
Superior colliculus
nTPM: 22.4
1913 Female, age 42, unknown 26.5
1895 Male, age 76, right hemisphere 24.4
1995 Male, age 72, unknown 23.6
1839 Male, age 51, unknown 22.9
2587 Male, age 74, left hemisphere 21.9
2668 Female, age 75, unknown 21.4
2261 Male, age 18, unknown 21.3
1796 Male, age 53, unknown 21.1
2087 Female, age 72, unknown 20.8
2664 Male, age 75, both hemispheres 20.4
Ventral tegmental area
nTPM: 22.7
2410 Female, age 72, unknown 24.4
2223 Female, age 72, unknown 23.4
1942 Male, age 51, unknown 22.7
2021 Male, age 53, unknown 22.4
1915 Female, age 42, unknown 22.0
2218 Male, age 76, both hemispheres 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.9
Samples: 139

Max nTPM: 2.6
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 2.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 2.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 2.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 2.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 2.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 1.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 1.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 17.2
Sample A Female 17.2
Sample B Female 17.8
Sample C Male 17.8
Sample D Male 18.5
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.0
Sample A Female 20.4
Sample B Female 19.0
Sample C Male 16.0
Sample D Male 16.6
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.2
Min nTPM: 16.2
Sample B Female 18.2
Sample C Male 16.2
Sample D Male 16.7
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.7
Sample A Female 15.1
Sample B Female 12.7
Sample C Male 16.2
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.9
Sample A Male 5.9
Sample B Male 7.5
Sample C Female 7.2
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
75931527 Antisense, RP_060606_01_B04, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org