MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.0 nTPM
HPA Brain:200.2 nTPM
GTEx:106.0 nTPM
FANTOM5:230.3 Scaled Tags Per Million
Pig:76.3 nTPM
Mouse:60.3 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 200.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 174.9
2586 Male, age 75, left hemisphere 289.9
1830 Male, age 51, unknown 202.8
1870 Female, age 42, unknown 193.3
1833 Male, age 53, unknown 189.6
2019 Male, age 18, unknown 181.0
2828 Female, age 72, unknown 160.5
2411 Female, age 72, unknown 159.1
2666 Male, age 74, left hemisphere 146.5
1827 Male, age 72, unknown 138.4
2219 Male, age 76, both hemispheres 88.3
Dorsal raphe nucleus
nTPM: 150.1
2016 Female, age 72, unknown 168.0
2047 Male, age 72, unknown 154.0
1828 Male, age 53, unknown 152.4
2750 Male, age 76, both hemispheres 147.9
2298 Female, age 72, unknown 128.2
Inferior colliculus
nTPM: 133.6
1848 Female, age 42, unknown 146.0
1890 Male, age 53, unknown 139.6
2849 Male, age 72, unknown 134.0
2097 Female, age 72, unknown 114.8
Median raphe nucleus
nTPM: 149.9
2220 Male, age 76, midline 149.9
Periaquaductal grey, anterior
nTPM: 135.9
2502 Female, age 75, unknown 145.0
1947 Male, age 18, unknown 140.3
1795 Male, age 51, unknown 122.4
Periaquaductal grey, dorsal
nTPM: 157.9
2850 Male, age 76, both hemispheres 238.8
2464 Female, age 72, unknown 144.1
1831 Male, age 72, unknown 139.2
1840 Male, age 53, unknown 109.4
Periaquaductal grey, lateral
nTPM: 172.7
2140 Male, age 76, both hemispheres 223.4
2053 Male, age 18, unknown 160.8
2272 Male, age 74, both hemispheres 133.9
Pretectal area
nTPM: 134.6
2316 Male, age 76, right hemisphere 175.0
2667 Female, age 75, unknown 149.4
1815 Male, age 53, unknown 147.8
2407 Male, age 75, both hemispheres 142.3
2825 Male, age 18, unknown 141.4
1817 Female, age 42, unknown 137.1
2273 Male, age 74, both hemispheres 132.8
2224 Female, age 72, unknown 124.8
1944 Female, age 72, unknown 119.2
2007 Male, age 72, unknown 113.1
1816 Male, age 51, unknown 97.7
Red nucleus
nTPM: 200.2
1865 Male, age 51, unknown 236.2
1821 Female, age 72, unknown 221.7
1954 Female, age 42, unknown 221.5
2227 Male, age 72, unknown 221.2
2769 Male, age 72, unknown 220.7
1904 Male, age 53, unknown 220.5
2584 Male, age 75, left hemisphere 192.2
2823 Male, age 76, right hemisphere 187.6
2785 Male, age 18, unknown 181.4
2725 Female, age 75, unknown 178.1
2503 Female, age 72, unknown 163.4
2588 Male, age 74, left hemisphere 157.6
Substantia nigra
nTPM: 161.7
2699 Male, age 18, unknown 195.1
2590 Female, age 75, unknown 180.0
1851 Male, age 51, unknown 176.8
2583 Male, age 75, right hemisphere 166.9
2665 Male, age 74, both hemispheres 157.1
2409 Female, age 72, unknown 156.2
1916 Female, age 42, unknown 154.0
1941 Male, age 53, unknown 150.0
1889 Female, age 72, unknown 143.1
2241 Male, age 72, unknown 137.5
Superior colliculus
nTPM: 148.5
1913 Female, age 42, unknown 208.2
1995 Male, age 72, unknown 205.3
2664 Male, age 75, both hemispheres 169.9
1839 Male, age 51, unknown 150.6
2587 Male, age 74, left hemisphere 136.6
1796 Male, age 53, unknown 136.2
1895 Male, age 76, right hemisphere 125.8
2668 Female, age 75, unknown 120.5
2087 Female, age 72, unknown 116.4
2261 Male, age 18, unknown 116.0
Ventral tegmental area
nTPM: 169.7
2223 Female, age 72, unknown 225.6
2021 Male, age 53, unknown 178.3
1942 Male, age 51, unknown 154.5
1915 Female, age 42, unknown 154.3
2218 Male, age 76, both hemispheres 153.4
2410 Female, age 72, unknown 152.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.0
Samples: 139

Max nTPM: 484.0
Min nTPM: 14.9
Std nTPM: 65.4
Median nTPM: 85.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 484.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 478.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 342.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 241.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 240.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 236.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 211.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 209.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 207.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 201.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 193.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 230.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 230.3
FF:10158-103A5 76 years, female 230.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.6
Samples: 4

Max nTPM: 78.9
Min nTPM: 51.6
Sample A Female 71.0
Sample B Female 69.0
Sample C Male 51.6
Sample D Male 78.9
Midbrain
nTPM: 67.8
Samples: 4

Max nTPM: 143.8
Min nTPM: 32.9
Sample A Female 143.8
Sample B Female 54.2
Sample C Male 40.2
Sample D Male 32.9
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 51.8
Min nTPM: 42.5
Sample B Female 51.8
Sample C Male 42.5
Sample D Male 50.4
Superior colliculi
nTPM: 76.3
Samples: 4

Max nTPM: 116.0
Min nTPM: 52.6
Sample A Female 78.7
Sample B Female 116.0
Sample C Male 52.6
Sample D Male 58.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 63.0
Min nTPM: 55.6
Sample A Male 63.0
Sample B Male 55.6
Sample C Female 61.2
Sample D Female 61.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
72182992 Antisense, RP_050927_01_G10, Mouse strain C57BL/6J (56 days, male) 12.5

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