MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA Brain:56.7 nTPM
GTEx:46.5 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:37.9 nTPM
Mouse:8.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
2019 Male, age 18, unknown 61.9
1830 Male, age 51, unknown 57.0
2411 Female, age 72, unknown 55.9
1833 Male, age 53, unknown 54.8
1870 Female, age 42, unknown 54.7
2828 Female, age 72, unknown 44.3
2666 Male, age 74, left hemisphere 36.0
1827 Male, age 72, unknown 34.4
2219 Male, age 76, both hemispheres 29.4
2586 Male, age 75, left hemisphere 28.5
Dorsal raphe nucleus
nTPM: 41.7
2750 Male, age 76, both hemispheres 55.9
2016 Female, age 72, unknown 40.9
2047 Male, age 72, unknown 37.8
2298 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 36.7
Inferior colliculus
nTPM: 36.2
1890 Male, age 53, unknown 39.7
1848 Female, age 42, unknown 37.2
2097 Female, age 72, unknown 35.4
2849 Male, age 72, unknown 32.4
Median raphe nucleus
nTPM: 38.2
2220 Male, age 76, midline 38.2
Periaquaductal grey, anterior
nTPM: 29.4
2502 Female, age 75, unknown 31.8
1947 Male, age 18, unknown 31.0
1795 Male, age 51, unknown 25.3
Periaquaductal grey, dorsal
nTPM: 35.6
2850 Male, age 76, both hemispheres 44.9
2464 Female, age 72, unknown 39.1
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 24.0
Periaquaductal grey, lateral
nTPM: 40.1
2140 Male, age 76, both hemispheres 44.8
2272 Male, age 74, both hemispheres 39.2
2053 Male, age 18, unknown 36.4
Pretectal area
nTPM: 35.2
2316 Male, age 76, right hemisphere 43.5
1815 Male, age 53, unknown 43.2
2667 Female, age 75, unknown 41.2
2273 Male, age 74, both hemispheres 40.5
1817 Female, age 42, unknown 36.6
2407 Male, age 75, both hemispheres 35.4
2007 Male, age 72, unknown 33.0
2825 Male, age 18, unknown 30.8
2224 Female, age 72, unknown 30.7
1944 Female, age 72, unknown 27.0
1816 Male, age 51, unknown 25.1
Red nucleus
nTPM: 56.7
1865 Male, age 51, unknown 69.7
1904 Male, age 53, unknown 68.4
2823 Male, age 76, right hemisphere 66.8
1821 Female, age 72, unknown 62.8
1954 Female, age 42, unknown 61.1
2227 Male, age 72, unknown 60.3
2769 Male, age 72, unknown 59.9
2785 Male, age 18, unknown 57.6
2503 Female, age 72, unknown 53.9
2725 Female, age 75, unknown 42.3
2588 Male, age 74, left hemisphere 41.7
2584 Male, age 75, left hemisphere 35.7
Substantia nigra
nTPM: 37.2
2590 Female, age 75, unknown 45.3
1851 Male, age 51, unknown 42.2
2699 Male, age 18, unknown 41.1
2583 Male, age 75, right hemisphere 40.3
2409 Female, age 72, unknown 37.9
1889 Female, age 72, unknown 36.5
2241 Male, age 72, unknown 35.8
1941 Male, age 53, unknown 32.8
1916 Female, age 42, unknown 31.6
2665 Male, age 74, both hemispheres 28.5
Superior colliculus
nTPM: 37.5
1995 Male, age 72, unknown 52.9
1913 Female, age 42, unknown 50.4
2587 Male, age 74, left hemisphere 46.7
1895 Male, age 76, right hemisphere 39.4
1839 Male, age 51, unknown 35.5
2087 Female, age 72, unknown 32.5
1796 Male, age 53, unknown 32.1
2668 Female, age 75, unknown 30.3
2664 Male, age 75, both hemispheres 29.3
2261 Male, age 18, unknown 26.1
Ventral tegmental area
nTPM: 41.6
2223 Female, age 72, unknown 52.4
2410 Female, age 72, unknown 51.2
2021 Male, age 53, unknown 40.0
1915 Female, age 42, unknown 35.9
1942 Male, age 51, unknown 35.8
2218 Male, age 76, both hemispheres 34.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.5
Samples: 139

Max nTPM: 127.6
Min nTPM: 21.0
Std nTPM: 16.7
Median nTPM: 42.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 127.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 110.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 83.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 83.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 75.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 74.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.6
Samples: 4

Max nTPM: 36.3
Min nTPM: 24.4
Sample A Female 31.0
Sample B Female 26.5
Sample C Male 24.4
Sample D Male 36.3
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 17.6
Sample A Female 62.0
Sample B Female 29.5
Sample C Male 23.0
Sample D Male 17.6
Periaqueductal gray
nTPM: 38.0
Samples: 3

Max nTPM: 43.4
Min nTPM: 32.1
Sample B Female 38.4
Sample C Male 43.4
Sample D Male 32.1
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 37.7
Min nTPM: 23.1
Sample A Female 30.8
Sample B Female 37.7
Sample C Male 26.0
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.4
Sample A Male 9.0
Sample B Male 8.2
Sample C Female 7.4
Sample D Female 8.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70634300 Antisense, RP_050725_01_F05, Mouse strain C57BL/6J (56 days, male) 0.9
75694415 Antisense, RP_060518_03_F12, Mouse strain C57BL/6J (56 days, male) 0.6

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