MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:11.2 nTPM
GTEx:4.9 nTPM
FANTOM5:17.2 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:11.4 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
1827 Male, age 72, unknown 10.9
2586 Male, age 75, left hemisphere 10.7
2219 Male, age 76, both hemispheres 10.4
1870 Female, age 42, unknown 10.3
2019 Male, age 18, unknown 10.2
1830 Male, age 51, unknown 10.0
2411 Female, age 72, unknown 9.7
2828 Female, age 72, unknown 9.7
1833 Male, age 53, unknown 9.5
2666 Male, age 74, left hemisphere 8.8
Dorsal raphe nucleus
nTPM: 9.9
2047 Male, age 72, unknown 11.0
2016 Female, age 72, unknown 10.9
2298 Female, age 72, unknown 10.9
1828 Male, age 53, unknown 8.5
2750 Male, age 76, both hemispheres 7.9
Inferior colliculus
nTPM: 11.2
2097 Female, age 72, unknown 11.8
1890 Male, age 53, unknown 11.2
2849 Male, age 72, unknown 11.2
1848 Female, age 42, unknown 10.6
Median raphe nucleus
nTPM: 8.4
2220 Male, age 76, midline 8.4
Periaquaductal grey, anterior
nTPM: 10.1
1947 Male, age 18, unknown 10.2
1795 Male, age 51, unknown 10.1
2502 Female, age 75, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 11.0
1840 Male, age 53, unknown 13.9
2850 Male, age 76, both hemispheres 10.3
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 10.0
2140 Male, age 76, both hemispheres 11.4
2272 Male, age 74, both hemispheres 9.6
2053 Male, age 18, unknown 9.2
Pretectal area
nTPM: 10.3
2273 Male, age 74, both hemispheres 12.0
2316 Male, age 76, right hemisphere 11.1
2825 Male, age 18, unknown 10.9
2224 Female, age 72, unknown 10.4
1815 Male, age 53, unknown 10.2
1944 Female, age 72, unknown 10.2
2667 Female, age 75, unknown 10.2
1816 Male, age 51, unknown 10.1
2407 Male, age 75, both hemispheres 10.1
2007 Male, age 72, unknown 10.0
1817 Female, age 42, unknown 8.5
Red nucleus
nTPM: 9.4
1954 Female, age 42, unknown 10.3
2823 Male, age 76, right hemisphere 10.3
1865 Male, age 51, unknown 10.1
2503 Female, age 72, unknown 9.8
1904 Male, age 53, unknown 9.7
2769 Male, age 72, unknown 9.7
1821 Female, age 72, unknown 9.6
2588 Male, age 74, left hemisphere 9.3
2725 Female, age 75, unknown 9.3
2785 Male, age 18, unknown 9.2
2227 Male, age 72, unknown 8.6
2584 Male, age 75, left hemisphere 7.2
Substantia nigra
nTPM: 9.5
2590 Female, age 75, unknown 11.2
1889 Female, age 72, unknown 10.3
2241 Male, age 72, unknown 10.1
2409 Female, age 72, unknown 10.1
2665 Male, age 74, both hemispheres 9.7
2583 Male, age 75, right hemisphere 9.4
1851 Male, age 51, unknown 9.0
1916 Female, age 42, unknown 8.5
2699 Male, age 18, unknown 8.4
1941 Male, age 53, unknown 8.0
Superior colliculus
nTPM: 10.1
2261 Male, age 18, unknown 11.5
1913 Female, age 42, unknown 11.2
2087 Female, age 72, unknown 11.2
1895 Male, age 76, right hemisphere 11.0
1839 Male, age 51, unknown 10.0
1995 Male, age 72, unknown 9.7
2587 Male, age 74, left hemisphere 9.5
2664 Male, age 75, both hemispheres 9.4
1796 Male, age 53, unknown 8.9
2668 Female, age 75, unknown 8.8
Ventral tegmental area
nTPM: 8.9
2021 Male, age 53, unknown 10.7
2223 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 9.0
1942 Male, age 51, unknown 8.8
2410 Female, age 72, unknown 7.8
2218 Male, age 76, both hemispheres 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 139

Max nTPM: 8.5
Min nTPM: 2.4
Std nTPM: 1.0
Median nTPM: 4.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 7.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 7.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 7.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 6.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 6.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 6.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.2
FF:10158-103A5 76 years, female 17.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 18.8
Min nTPM: 16.7
Sample A Female 18.8
Sample B Female 16.7
Sample C Male 17.4
Sample D Male 18.6
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 20.9
Min nTPM: 18.0
Sample A Female 20.0
Sample B Female 19.4
Sample C Male 18.0
Sample D Male 20.9
Periaqueductal gray
nTPM: 17.2
Samples: 3

Max nTPM: 17.7
Min nTPM: 16.9
Sample B Female 16.9
Sample C Male 17.7
Sample D Male 17.0
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 19.0
Min nTPM: 17.2
Sample A Female 19.0
Sample B Female 18.2
Sample C Male 17.2
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.8
Sample A Male 11.7
Sample B Male 10.8
Sample C Female 12.1
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68919940 Antisense, RP_050301_02_G12, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org