HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:7.3 nTPM
HPA Brain:27.2 nTPM
GTEx:7.3 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:13.5 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045666Antibody HPA046737
Glial cells LowNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Hippocampus
nTPM: 24.0
1911 Female, age 85, right hemisphere 30.5
1898 Male, age 80, left hemisphere 27.4
1855 Male, age 76, left hemisphere 25.3
2621 Female, age 67, right hemisphere 21.9
2529 Female, age 94, left hemisphere 21.6
2148 Female, age 91, left hemisphere 17.2
Dentate gyrus
nTPM: 20.5
2010 Male, age 76, both hemispheres 26.7
2528 Male, age 74, both hemispheres 21.5
2530 Female, age 94, left hemisphere 21.0
1927 Female, age 91, both hemispheres 20.6
2246 Female, age 85, both hemispheres 19.9
2531 Female, age 67, both hemispheres 13.5
Entorhinal gyrus
nTPM: 21.8
2117 Female, age 91, right hemisphere 30.9
1938 Female, age 85, left hemisphere 25.2
1787 Male, age 76, left hemisphere 20.4
2686 Male, age 75, right hemisphere 19.5
2764 Male, age 80, right hemisphere 17.8
2613 Female, age 94, left hemisphere 17.0
Hippocampus, CA1
nTPM: 21.5
2527 Male, age 74, both hemispheres 25.4
1873 Female, age 85, both hemispheres 23.8
2082 Female, age 91, right hemisphere 21.2
2045 Male, age 76, both hemispheres 20.9
2749 Male, age 80, left hemisphere 16.2
Hippocampus, CA2
nTPM: 23.6
1940 Female, age 85, left hemisphere 25.0
2113 Female, age 91, right hemisphere 25.0
1892 Male, age 76, both hemispheres 24.4
1963 Male, age 80, left hemisphere 23.7
2249 Male, age 74, both hemispheres 23.0
2437 Female, age 94, left hemisphere 20.7
Hippocampus, CA3
nTPM: 20.1
1891 Female, age 85, both hemispheres 30.2
1867 Male, age 76, both hemispheres 26.6
2436 Male, age 74, both hemispheres 20.1
2861 Female, age 67, both hemispheres 15.2
2137 Male, age 80, left hemisphere 14.3
2620 Female, age 94, left hemisphere 14.0
Parahippocampal cortex
nTPM: 21.9
2018 Male, age 76, both hemispheres 25.3
1850 Male, age 80, both hemispheres 24.5
2692 Male, age 74, both hemispheres 24.4
2250 Female, age 67, right hemisphere 23.3
1990 Female, age 91, right hemisphere 23.2
2532 Female, age 72, left hemisphere 21.9
1933 Female, age 85, both hemispheres 21.8
2693 Female, age 94, both hemispheres 20.2
2245 Female, age 91, both hemispheres 17.4
2622 Female, age 67, right hemisphere 16.6
Perirhinal gyrus
nTPM: 19.4
1847 Female, age 91, left hemisphere 21.1
1841 Female, age 85, right hemisphere 20.6
1794 Male, age 80, right hemisphere 18.5
2521 Female, age 94, right hemisphere 18.5
2848 Male, age 76, right hemisphere 18.3
Subiculum
nTPM: 27.2
2042 Male, age 76, both hemispheres 33.4
2438 Female, age 94, left hemisphere 29.6
2729 Female, age 91, right hemisphere 27.4
1901 Male, age 80, both hemispheres 26.7
2619 Male, age 74, both hemispheres 24.5
1977 Female, age 85, both hemispheres 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.3
Samples: 197

Max nTPM: 17.1
Min nTPM: 0.4
Std nTPM: 2.6
Median nTPM: 6.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 17.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 15.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 14.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 14.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 13.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 13.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 12.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 12.8
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 12.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 12.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.8
FF:10169-103B7 60 years, female 52.9
FF:10153-102I9 76 years, female 42.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Subiculum
nTPM: 39.9
Samples: 4

Max nTPM: 41.4
Min nTPM: 37.4
Sample A Female 37.4
Sample B Female 39.9
Sample C Male 40.7
Sample D Male 41.4
Dorsal hippocampus
nTPM: 38.0
Samples: 4

Max nTPM: 43.4
Min nTPM: 35.9
Sample A Female 35.9
Sample B Female 36.8
Sample C Male 43.4
Sample D Male 35.9
Entorhinal cortex
nTPM: 36.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 36.0
Sample C Male 36.1
Sample D Male 37.6
Ventral hippocampus
nTPM: 36.2
Samples: 4

Max nTPM: 43.1
Min nTPM: 27.6
Sample A Female 39.5
Sample B Female 43.1
Sample C Male 27.6
Sample D Male 34.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 11.7
Sample A Male 14.2
Sample B Male 13.0
Sample C Female 13.3
Sample D Female 11.7
Hippocampal formation
nTPM: 13.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 12.5
Sample A Male 13.4
Sample B Male 14.3
Sample C Female 13.7
Sample D Female 12.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69447924 Antisense, RP_050419_02_D02, Mouse strain C57BL/6J (56 days, male) 0.1

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