MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:14.1 nTPM
GTEx:13.7 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:27.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.2
1870 Female, age 42, unknown 11.9
1833 Male, age 53, unknown 11.2
1830 Male, age 51, unknown 10.9
2828 Female, age 72, unknown 10.9
2411 Female, age 72, unknown 10.8
2019 Male, age 18, unknown 9.9
2586 Male, age 75, left hemisphere 9.9
1827 Male, age 72, unknown 9.1
2219 Male, age 76, both hemispheres 9.0
2666 Male, age 74, left hemisphere 8.6
Dorsal raphe nucleus
nTPM: 13.1
2016 Female, age 72, unknown 15.8
2298 Female, age 72, unknown 14.1
1828 Male, age 53, unknown 12.7
2047 Male, age 72, unknown 12.0
2750 Male, age 76, both hemispheres 10.9
Inferior colliculus
nTPM: 10.4
2097 Female, age 72, unknown 11.8
1890 Male, age 53, unknown 11.2
1848 Female, age 42, unknown 9.4
2849 Male, age 72, unknown 9.2
Median raphe nucleus
nTPM: 9.1
2220 Male, age 76, midline 9.1
Periaquaductal grey, anterior
nTPM: 14.1
1947 Male, age 18, unknown 16.7
1795 Male, age 51, unknown 13.0
2502 Female, age 75, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 12.5
1840 Male, age 53, unknown 13.6
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 12.8
2464 Female, age 72, unknown 10.6
Periaquaductal grey, lateral
nTPM: 13.4
2272 Male, age 74, both hemispheres 14.1
2053 Male, age 18, unknown 13.9
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 10.7
2273 Male, age 74, both hemispheres 15.5
2224 Female, age 72, unknown 12.2
2407 Male, age 75, both hemispheres 11.7
2667 Female, age 75, unknown 11.2
2825 Male, age 18, unknown 11.1
1944 Female, age 72, unknown 10.3
1815 Male, age 53, unknown 10.2
2316 Male, age 76, right hemisphere 9.5
1816 Male, age 51, unknown 8.8
2007 Male, age 72, unknown 8.8
1817 Female, age 42, unknown 8.6
Red nucleus
nTPM: 11.0
1821 Female, age 72, unknown 12.7
2725 Female, age 75, unknown 12.7
2503 Female, age 72, unknown 12.4
1865 Male, age 51, unknown 12.1
1904 Male, age 53, unknown 12.1
2769 Male, age 72, unknown 11.5
2227 Male, age 72, unknown 11.2
1954 Female, age 42, unknown 11.0
2823 Male, age 76, right hemisphere 9.5
2785 Male, age 18, unknown 9.3
2588 Male, age 74, left hemisphere 8.8
2584 Male, age 75, left hemisphere 8.7
Substantia nigra
nTPM: 13.9
2409 Female, age 72, unknown 17.9
2241 Male, age 72, unknown 15.4
1851 Male, age 51, unknown 15.0
2590 Female, age 75, unknown 14.5
2583 Male, age 75, right hemisphere 14.1
2699 Male, age 18, unknown 14.1
1916 Female, age 42, unknown 13.3
2665 Male, age 74, both hemispheres 12.7
1941 Male, age 53, unknown 10.9
1889 Female, age 72, unknown 10.6
Superior colliculus
nTPM: 11.3
1913 Female, age 42, unknown 14.4
1995 Male, age 72, unknown 14.2
2664 Male, age 75, both hemispheres 13.0
2587 Male, age 74, left hemisphere 12.7
2087 Female, age 72, unknown 11.0
2261 Male, age 18, unknown 9.9
1796 Male, age 53, unknown 9.8
1839 Male, age 51, unknown 9.8
2668 Female, age 75, unknown 9.5
1895 Male, age 76, right hemisphere 8.6
Ventral tegmental area
nTPM: 12.6
1942 Male, age 51, unknown 14.1
2410 Female, age 72, unknown 13.5
1915 Female, age 42, unknown 13.4
2021 Male, age 53, unknown 13.0
2223 Female, age 72, unknown 11.6
2218 Male, age 76, both hemispheres 10.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 139

Max nTPM: 26.6
Min nTPM: 4.6
Std nTPM: 4.1
Median nTPM: 13.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 26.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 21.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 20.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 20.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 20.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 20.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 19.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.7
FF:10158-103A5 76 years, female 19.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.8
Samples: 4

Max nTPM: 31.5
Min nTPM: 30.0
Sample A Female 31.4
Sample B Female 30.0
Sample C Male 30.2
Sample D Male 31.5
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 49.1
Min nTPM: 17.7
Sample A Female 49.1
Sample B Female 29.5
Sample C Male 22.5
Sample D Male 17.7
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 39.9
Min nTPM: 32.2
Sample B Female 32.2
Sample C Male 39.9
Sample D Male 34.4
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 23.2
Min nTPM: 21.3
Sample A Female 22.7
Sample B Female 21.3
Sample C Male 23.2
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 23.6
Sample A Male 26.6
Sample B Male 23.6
Sample C Female 29.7
Sample D Female 29.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67978710 Antisense, RP_040923_01_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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