MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.6 nTPM
HPA Brain:44.5 nTPM
GTEx:49.6 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:61.5 nTPM
Mouse:46.1 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 53.1
2411 Female, age 72, unknown 44.3
2666 Male, age 74, left hemisphere 40.6
1827 Male, age 72, unknown 39.8
2828 Female, age 72, unknown 39.6
2019 Male, age 18, unknown 37.3
1833 Male, age 53, unknown 36.1
1870 Female, age 42, unknown 35.9
2219 Male, age 76, both hemispheres 34.5
1830 Male, age 51, unknown 32.2
Dorsal raphe nucleus
nTPM: 38.7
2047 Male, age 72, unknown 44.7
2298 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 38.3
1828 Male, age 53, unknown 36.7
2016 Female, age 72, unknown 32.2
Inferior colliculus
nTPM: 33.0
2849 Male, age 72, unknown 34.7
1848 Female, age 42, unknown 33.1
1890 Male, age 53, unknown 32.1
2097 Female, age 72, unknown 32.0
Median raphe nucleus
nTPM: 42.1
2220 Male, age 76, midline 42.1
Periaquaductal grey, anterior
nTPM: 42.5
1795 Male, age 51, unknown 43.6
2502 Female, age 75, unknown 42.6
1947 Male, age 18, unknown 41.4
Periaquaductal grey, dorsal
nTPM: 35.6
1840 Male, age 53, unknown 38.6
2850 Male, age 76, both hemispheres 35.5
1831 Male, age 72, unknown 34.6
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 30.4
2053 Male, age 18, unknown 34.6
2272 Male, age 74, both hemispheres 29.3
2140 Male, age 76, both hemispheres 27.4
Pretectal area
nTPM: 36.2
2007 Male, age 72, unknown 42.6
1816 Male, age 51, unknown 42.2
2407 Male, age 75, both hemispheres 40.2
1817 Female, age 42, unknown 37.2
1815 Male, age 53, unknown 37.0
1944 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 36.1
2224 Female, age 72, unknown 34.5
2667 Female, age 75, unknown 32.5
2273 Male, age 74, both hemispheres 30.1
2316 Male, age 76, right hemisphere 29.3
Red nucleus
nTPM: 34.8
2584 Male, age 75, left hemisphere 45.7
1821 Female, age 72, unknown 38.4
2588 Male, age 74, left hemisphere 37.2
1865 Male, age 51, unknown 37.1
2785 Male, age 18, unknown 33.8
2503 Female, age 72, unknown 33.7
2769 Male, age 72, unknown 33.0
1904 Male, age 53, unknown 32.8
2227 Male, age 72, unknown 32.1
2725 Female, age 75, unknown 31.7
1954 Female, age 42, unknown 31.6
2823 Male, age 76, right hemisphere 31.2
Substantia nigra
nTPM: 43.4
1916 Female, age 42, unknown 53.4
1851 Male, age 51, unknown 50.4
2665 Male, age 74, both hemispheres 49.4
2583 Male, age 75, right hemisphere 45.2
1941 Male, age 53, unknown 45.1
2699 Male, age 18, unknown 42.8
2590 Female, age 75, unknown 41.1
1889 Female, age 72, unknown 40.9
2241 Male, age 72, unknown 39.8
2409 Female, age 72, unknown 25.4
Superior colliculus
nTPM: 36.8
2668 Female, age 75, unknown 45.5
2664 Male, age 75, both hemispheres 44.3
1796 Male, age 53, unknown 41.7
1913 Female, age 42, unknown 37.5
2587 Male, age 74, left hemisphere 36.2
2261 Male, age 18, unknown 34.9
2087 Female, age 72, unknown 32.9
1839 Male, age 51, unknown 32.7
1895 Male, age 76, right hemisphere 31.2
1995 Male, age 72, unknown 30.7
Ventral tegmental area
nTPM: 44.5
2410 Female, age 72, unknown 55.3
2218 Male, age 76, both hemispheres 45.8
2223 Female, age 72, unknown 43.4
1915 Female, age 42, unknown 43.0
2021 Male, age 53, unknown 40.1
1942 Male, age 51, unknown 39.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.6
Samples: 139

Max nTPM: 89.2
Min nTPM: 23.9
Std nTPM: 10.1
Median nTPM: 49.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 89.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 70.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 70.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 67.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 66.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 65.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 63.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 63.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.6
Samples: 4

Max nTPM: 65.6
Min nTPM: 50.7
Sample A Female 65.2
Sample B Female 50.7
Sample C Male 65.6
Sample D Male 52.7
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 71.9
Min nTPM: 52.6
Sample A Female 71.9
Sample B Female 54.6
Sample C Male 67.0
Sample D Male 52.6
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 54.7
Min nTPM: 41.0
Sample B Female 50.2
Sample C Male 54.7
Sample D Male 41.0
Superior colliculi
nTPM: 61.3
Samples: 4

Max nTPM: 69.8
Min nTPM: 47.0
Sample A Female 63.6
Sample B Female 47.0
Sample C Male 69.8
Sample D Male 64.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 50.9
Min nTPM: 41.3
Sample A Male 50.9
Sample B Male 44.6
Sample C Female 41.3
Sample D Female 47.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
74819497 Antisense, RP_060315_02_F12, Mouse strain C57BL/6J (56 days, male) 8.9
69838419 Antisense, RP_050303_01_D10, Mouse strain C57BL/6J (56 days, male) 6.4

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