MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.2 nTPM
HPA Brain:56.4 nTPM
GTEx:81.2 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:40.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.9
2586 Male, age 75, left hemisphere 88.6
2666 Male, age 74, left hemisphere 61.7
2019 Male, age 18, unknown 61.0
2219 Male, age 76, both hemispheres 55.2
2828 Female, age 72, unknown 45.3
2411 Female, age 72, unknown 43.9
1827 Male, age 72, unknown 43.0
1870 Female, age 42, unknown 40.5
1833 Male, age 53, unknown 35.6
1830 Male, age 51, unknown 34.3
Dorsal raphe nucleus
nTPM: 46.4
1828 Male, age 53, unknown 57.0
2047 Male, age 72, unknown 49.4
2298 Female, age 72, unknown 45.7
2750 Male, age 76, both hemispheres 45.4
2016 Female, age 72, unknown 34.4
Inferior colliculus
nTPM: 44.0
2097 Female, age 72, unknown 49.8
1890 Male, age 53, unknown 48.4
1848 Female, age 42, unknown 40.2
2849 Male, age 72, unknown 37.5
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Periaquaductal grey, anterior
nTPM: 45.6
1795 Male, age 51, unknown 47.8
2502 Female, age 75, unknown 46.3
1947 Male, age 18, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 34.6
1840 Male, age 53, unknown 42.3
1831 Male, age 72, unknown 34.2
2464 Female, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 29.0
Periaquaductal grey, lateral
nTPM: 25.7
2140 Male, age 76, both hemispheres 26.5
2053 Male, age 18, unknown 25.5
2272 Male, age 74, both hemispheres 25.2
Pretectal area
nTPM: 50.5
2007 Male, age 72, unknown 88.2
1817 Female, age 42, unknown 78.5
1944 Female, age 72, unknown 77.1
1816 Male, age 51, unknown 72.2
1815 Male, age 53, unknown 51.5
2667 Female, age 75, unknown 40.4
2407 Male, age 75, both hemispheres 36.9
2825 Male, age 18, unknown 32.4
2224 Female, age 72, unknown 30.3
2273 Male, age 74, both hemispheres 25.5
2316 Male, age 76, right hemisphere 22.6
Red nucleus
nTPM: 44.9
2785 Male, age 18, unknown 64.9
2588 Male, age 74, left hemisphere 52.3
2584 Male, age 75, left hemisphere 48.6
1821 Female, age 72, unknown 46.9
2769 Male, age 72, unknown 46.0
2725 Female, age 75, unknown 45.1
1954 Female, age 42, unknown 43.3
2503 Female, age 72, unknown 43.1
2227 Male, age 72, unknown 41.3
1865 Male, age 51, unknown 40.4
1904 Male, age 53, unknown 35.1
2823 Male, age 76, right hemisphere 31.9
Substantia nigra
nTPM: 56.4
1916 Female, age 42, unknown 75.9
2665 Male, age 74, both hemispheres 73.6
1889 Female, age 72, unknown 64.3
1851 Male, age 51, unknown 63.6
1941 Male, age 53, unknown 58.0
2583 Male, age 75, right hemisphere 55.8
2241 Male, age 72, unknown 44.4
2699 Male, age 18, unknown 43.5
2590 Female, age 75, unknown 43.1
2409 Female, age 72, unknown 42.2
Superior colliculus
nTPM: 43.7
2087 Female, age 72, unknown 60.5
2668 Female, age 75, unknown 59.3
2664 Male, age 75, both hemispheres 53.5
1796 Male, age 53, unknown 44.8
2261 Male, age 18, unknown 44.4
1913 Female, age 42, unknown 39.9
1895 Male, age 76, right hemisphere 36.2
1839 Male, age 51, unknown 34.7
1995 Male, age 72, unknown 34.5
2587 Male, age 74, left hemisphere 29.6
Ventral tegmental area
nTPM: 49.8
1915 Female, age 42, unknown 56.8
2218 Male, age 76, both hemispheres 56.4
2410 Female, age 72, unknown 55.3
1942 Male, age 51, unknown 48.9
2223 Female, age 72, unknown 41.4
2021 Male, age 53, unknown 39.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.2
Samples: 139

Max nTPM: 175.1
Min nTPM: 29.7
Std nTPM: 26.7
Median nTPM: 78.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 175.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 156.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 139.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 136.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 132.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 129.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 128.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 128.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 126.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.8
FF:10158-103A5 76 years, female 39.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.9
Samples: 4

Max nTPM: 22.4
Min nTPM: 17.3
Sample A Female 22.4
Sample B Female 18.3
Sample C Male 21.6
Sample D Male 17.3
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 24.1
Min nTPM: 17.1
Sample A Female 20.4
Sample B Female 17.1
Sample C Male 24.1
Sample D Male 19.0
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 16.4
Min nTPM: 13.2
Sample B Female 16.4
Sample C Male 16.2
Sample D Male 13.2
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 17.2
Sample A Female 23.1
Sample B Female 17.2
Sample C Male 26.9
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 42.6
Min nTPM: 36.9
Sample A Male 42.6
Sample B Male 39.4
Sample C Female 36.9
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
71608344 Antisense, RP_050927_01_D12, Mouse strain C57BL/6J (56 days, male) 2.4

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